BAC Information

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BAC

Clone NameMSMg01-263O01
Chromosome8 (Build37)
Map Location 131,258,596 - 131,445,253
singlet/doubletdoublet
Overlap geneLOC100042659
Upstream geneNrp1, LOC668494, Itgb1
Downstream geneLOC100042667, Ccdc7, 1700008F21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263O01.T7 (MSMg01no263_o01.b1)MSMg01-263O01.TJ (MSMg01no263_o01.g1)
ACCAG405580AG405581
length734736
length of high quality
(start - end)		315 (47 - 361)658 (74 - 731)
definitionCHROMAT_FILE: MSMg01no263_o01.b1 PHD_FILE: MSMg01no263_o01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:55 2005CHROMAT_FILE: MSMg01no263_o01.g1 PHD_FILE: MSMg01no263_o01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(131,258,596 - 131,258,908)(131,444,596 - 131,445,253)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGGATCCGCGGA
ATTCCAGGTGTATCTGCTGCCCCAGTTCTCATAGATCTAAACAAGAAGAC
AGTTGAGAATTGTTCTCCAAATAACTCTTAGAGAGGTTGCTTCTGCTAAT
TATTGAACTGTGTTCTCCATTGTGAGCACCATAAGGTGCTTAAGGTTAAT
AACAAACTTACATAAACATCTAAAATTTCACTCACTGTAGCTACCTGTTG
AGAGCCCAATTCATCTGTTCCATATTGAAGGACAACATGCACATTTCCAC
AAAATTCTACAGAGTGTTAATGGAATGGAACTCTTTCATAATCATTCTGA
AAAAAGGTGGCTGGATTAAGAGGATCATTTAAGCACCATCTGCCAGTATT
TCTAGAACCTGGATTATAGTCACCCCCACCAACTGCTTGCCTATGTGGTT
GGCTGAGTTCTTACAGTGCTTATGACACAGGTCGCTTCATAGTAGGCACA
TCTTAATATCACATATCTAGAATCCGGTTATACTGTTCTGTGGATGGGGA
CAGTGTACTTATGTTTTTAACAGCTCCTATGGCGTATTCTATTTTGTGGA
TGAGCTTGAGATGCCTTGCCCTCTATAACTTTATTCCCCCCTCTGATGGC
ACCCAATTATTCCTCAGGCCAACTGCATTTGTTAAATATCACCATTTCTC
ACCTCATTCCCCCTCTATACTTTCCTATGTCTTC

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATTCCATGTGTTTCCACTGCTGAGTAC
AATTGTTGCTGGAACTGAAAGATAAATATATTTTACGGAGGCTGAAGCAG
AAAGTGGTCAGTAGCCACGGAGGCCTCTTAGATGGCCTTCGAGGCAATTT
GTAGGGTTAGATTCACACAGAATTTGAGACCTGCTTAAAAAATTCATAGA
TTACTCTTGGTGGCATCGTATTGATGGAAATAAGAAGGTTCCAGTATCAG
AGAAGACCCCAAAATGGCATCACATCTTTTGTGTTTGTTGGGACCAATAC
AGACCAAAGATTGGTAGTGAGCTACTCCAGAACAAGACACCACGTGCTCT
CCACATTTCTCAGATTTCACTTAAACATTTGGTCCATGAACCTTGTCTGT
AGTAATGGACAAGTCATGTTGTATCAGAGTCAACAAAGCATGGATAGATT
CCTTGTTAGCTGCTCCAATCACCTAGCTCTGCCACTGGGCCATCACAGTC
ATCTAGCACAAGCAGCCACTGTCACTCACTGAGTTAACAAGGCTAATACA
TTTATGGAAAAAGGAAATCTTCATGTTTCTGTAGTCTCTGCAAATGGATT
GGCTGGAGAGACTTGCATTATTTATTACAATCATATTTTTAACAAATGAT
CACAAAGGGCAATGGTGTGGAAAACTTGTCAGTAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_o01.b1 MSMg01no263_o01.b1 CHROMAT_FILE:
MSMg01no263_o01.b1 PHD_FILE: MSMg01no263_o01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:55 2005
         (315 letters)



>mm_chr8_131258394_131259108
          Length = 715

 Score =  590 bits (305), Expect = e-173
 Identities = 311/313 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattccaggtgtatctgctgccccagttctcatagatctaaacaagaagacagttgaga 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattccaggtgtatctgctgccccagttctcatagatctaaacaagaagacagttgaga 262

                                                                       
Query: 63  attgttctccaaataactcttagagaggttgcttctgctaattattgaactgtgttctcc 122
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 attgttctccaaataagtcttagagaggttgcttctgctaattattgaactgtgttctcc 322

                                                                       
Query: 123 attgtgagcaccataaggtgcttaaggttaataacaaacttacataaacatctaaaattt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 attgtgagcaccataaggtgcttaaggttaataacaaacttacataaacatctaaaattt 382

                                                                       
Query: 183 cactcactgtagctacctgttgagagcccaattcatctgttccatattgaaggacaacat 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cactcactgtagctacctgttgagagcccaattcatctgttccatattgaaggacaacat 442

                                                                       
Query: 243 gcacatttccacaaaattctacagagtgttaatggaatggaactctttcataatcattct 302
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 443 gcacatttccacaaaattctacagagtgttaatggaagggaactctttcataatcattct 502

                        
Query: 303 gaaaaaaggtggc 315
           |||||||||||||
Sbjct: 503 gaaaaaaggtggc 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no263_o01.g1 MSMg01no263_o01.g1 CHROMAT_FILE:
MSMg01no263_o01.g1 PHD_FILE: MSMg01no263_o01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:55 2005
         (658 letters)



>mm_chr8_131444396_131445453
          Length = 1058

 Score = 1257 bits (650), Expect = 0.0
 Identities = 656/658 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attccatgtgtttccactgctgagtacaattgttgctggaactgaaagataaatatattt 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 attccatgtgttttcactgctgagtacaattgttgctggaactgaaagataaatatattt 799

                                                                       
Query: 61  tacggaggctgaagcagaaagtggtcagtagccacggaggcctcttagatggccttcgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 tacggaggctgaagcagaaagtggtcagtagccacggaggcctcttagatggccttcgag 739

                                                                       
Query: 121 gcaatttgtagggttagattcacacagaatttgagacctgcttaaaaaattcatagatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 gcaatttgtagggttagattcacacagaatttgagacctgcttaaaaaattcatagatta 679

                                                                       
Query: 181 ctcttggtggcatcgtattgatggaaataagaaggttccagtatcagagaagaccccaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ctcttggtggcatcgtattgatggaaataagaaggttccagtatcagagaagaccccaaa 619

                                                                       
Query: 241 atggcatcacatcttttgtgtttgttgggaccaatacagaccaaagattggtagtgagct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 atggcatcacatcttttgtgtttgttgggaccaatacagaccaaagattggtagtgagct 559

                                                                       
Query: 301 actccagaacaagacaccacgtgctctccacatttctcagatttcacttaaacatttggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 actccagaacaagacaccacgtgctctccacatttctcagatttcacttaaacatttggt 499

                                                                       
Query: 361 ccatgaaccttgtctgtagtaatggacaagtcatgttgtatcagagtcaacaaagcatgg 420
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 498 ccatgaaccttgtctgtagtaatggacaagtcatgttgtatcaaagtcaacaaagcatgg 439

                                                                       
Query: 421 atagattccttgttagctgctccaatcacctagctctgccactgggccatcacagtcatc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 atagattccttgttagctgctccaatcacctagctctgccactgggccatcacagtcatc 379

                                                                       
Query: 481 tagcacaagcagccactgtcactcactgagttaacaaggctaatacatttatggaaaaag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tagcacaagcagccactgtcactcactgagttaacaaggctaatacatttatggaaaaag 319

                                                                       
Query: 541 gaaatcttcatgtttctgtagtctctgcaaatggattggctggagagacttgcattattt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gaaatcttcatgtttctgtagtctctgcaaatggattggctggagagacttgcattattt 259

                                                                     
Query: 601 attacaatcatatttttaacaaatgatcacaaagggcaatggtgtggaaaacttgtca 658
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 attacaatcatatttttaacaaatgatcacaaagggcaatggtgtggaaaacttgtca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space:   679104
Effective search space used:   679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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