BAC Information

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BAC

Clone NameMSMg01-265L17
Chromosome8 (Build37)
Map Location 111,261,973 - 111,415,970
singlet/doubletdoublet
Overlap geneAtbf1
Upstream geneLOC100041744
Downstream gene4922502B01Rik, Gm1943, LOC100042829, Pmfbp1, Dhx38, Txnl4b, Hp, Dhodh, Pkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089, LOC672735, Ap1g1, Phlppl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265L17.T7 (MSMg01no265_l17.b1)MSMg01-265L17.TJ (MSMg01no265_l17.g1)
ACCAG406913AG406914
length809748
length of high quality
(start - end)
260 (51 - 310)234 (130 - 363)
definitionCHROMAT_FILE: MSMg01no265_l17.b1 PHD_FILE: MSMg01no265_l17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:19 2005CHROMAT_FILE: MSMg01no265_l17.g1 PHD_FILE: MSMg01no265_l17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,415,721 - 111,415,970)(111,261,973 - 111,262,206)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
GCTAGAGAATGCCACCTGCATAGTGACAGTGACAGCTGCCAATTCCCCCC
ACCTGAAGGAAGAGCCACAGGTGATCAGTGGCTCCCAAGAGAGGGGGAGT
CACTCTTCTCCAGTGAGGGACTCTGACAAGTTATCTTGTCCCACCCGGTC
AACCTTAAACAATATATGTACAACAGTGAAGGAACCCAGCCAGTTGTGTA
TGTGTATAAATACTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
CATGCAGGAGAGTATATTACTATATAAGACGATCATATATTTATATAAGA
GGTTAAGTANGCTTCCGGGGCGAACCCCTGAAATAGGTTAGTAGATTAAA
TGGGTATGCCCCCCCAAAAAAAAAAAAAAAAAAATCGGGGGGGGGGGGGG
TGGTTATATCCTCCCATATCTATTACATTCAACTTATATTCTTCTTTTCC
TATATTTGTTAATGTTTATATCCTTATTATATCTCTTAATTATGCTCTCG
TTTCCCCGCTTTATTCTTAATGTTATTTCTCGACCCATTAGATACTCCTT
CATCATTTTTTTTATTTCCTCCAATCAATCACCTATTGTCCAAAGCCTTT
ACATATCAGTAAATATATTAACCATCTGGTATTTTACCTCTTAAAAACTT
ACTCACCTTTTTCTATATACCTTCATTCTCTAATCCCGACCGCATTATTA
TATTTTACCCGGTCCCCTCCTTCCTTACTCTATTGGTCCTAATTATGTTA
TAAATTCTA
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTAGATGTTGCTTCAGTCTGGAT
GCTTCTCCTCAGTTGAGATATTGGCCCTCCTCTTTCCTTCATGGAGTCCT
CCCATCCCCAGCTACAGTCACCCTCATCACTTCCTCTGCCCAAGCCCCTC
CTCACTTATCCTCTTTCTAAGCAAGACAGGCAAAGCTTTTTGGAAGTGAG
ATGGGAAGCAGTGTGGGTCTTACATGTTCTTCTGTGATCGAGGGTATAGA
CCAAGCCTGTTGACTTAGTGTCATGCTAGGGCCAGAGGCGCCTTGTGGTA
CTATATACACTTGTTTCTTGTTATGCCCCTCTCCCACGAAATGGATGCTG
TTTGACTCGGTGCGCAGCTCGCCCAGATGAAAAAAAAAATCAGTGACGTG
GTGTGTTGTCGCTGGGGCCACAGAAGCCTTTGACCAGCGTTGTGGTATGT
GGTGTCAGCATATCCTCTTTCTTGGTTACTTGTGAGACTCTCTCAAAGGT
TGGCACGTGTGGTGACAAGGTGACATGAGGTGTGCCTGCTAGGTCCCTGT
CCTCACATCATTCACTAACCCTTTCTTAAGATTCAAGTTTTCTGTAAAAC
AAGATGGAACGACGTGAAGGATGGATGCCTTAAACCACCTCTTGNTTCCT
TCAGACTTTTCTAAGAAGCCTTTATTTTTTATTTTATGTGTATGCGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_l17.b1 MSMg01no265_l17.b1 CHROMAT_FILE:
MSMg01no265_l17.b1 PHD_FILE: MSMg01no265_l17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:19 2005
         (260 letters)



>mm_chr8_111415557_111416216
          Length = 660

 Score =  476 bits (246), Expect = e-139
 Identities = 249/250 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctagagaatgccacctgcatagtgacagtgacagctgccaattccccccacctgaagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 gctagagaatgccacctgcatagtgacagtgacagctgccaattccccccacctgaagga 355

                                                                       
Query: 61  agagccacaggtgatcagtggctcccaagagagggggagtcactcttctccagtgaggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 agagccacaggtgatcagtggctcccaagagagggggagtcactcttctccagtgaggga 295

                                                                       
Query: 121 ctctgacaagttatcttgtcccacccggtcaaccttaaacaatatatgtacaacagtgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ctctgacaagttatcttgtcccacccggtcaaccttaaacaatatatgtacaacagtgaa 235

                                                                       
Query: 181 ggaacccagccagttgtgtatgtgtataaatacttgtgtgtgtgtgtgtgtgtgtgtgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 234 ggaacccagccagttgtgtatgtgtataaatacttgtgtgtgtgtgtgtgtatgtgtgtg 175

                     
Query: 241 tgtgtgtgtg 250
           ||||||||||
Sbjct: 174 tgtgtgtgtg 165


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 260
Length of database: 660
Length adjustment: 9
Effective length of query: 251
Effective length of database: 651
Effective search space:   163401
Effective search space used:   163401
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no265_l17.g1 MSMg01no265_l17.g1 CHROMAT_FILE:
MSMg01no265_l17.g1 PHD_FILE: MSMg01no265_l17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:19 2005
         (234 letters)



>mm_chr8_111261773_111262406
          Length = 634

 Score =  406 bits (210), Expect = e-118
 Identities = 228/234 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctctttccttcatggagtcctcccatccccagctacagtcaccctcatcacttcctctgc 60
           |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 201 ctctttccttcatggagtcctcccttccccagctacagtcaccctcttcacttcctctgc 260

                                                                       
Query: 61  ccaagcccctcctcacttatcctctttctaagcaagacaggcaaagctttttggaagtga 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaagccccccctcacttatcctctttctaagcaagacaggcaaagctttttggaagtga 320

                                                                       
Query: 121 gatgggaagcagtgtgggtcttacatgttcttctgtgatcgagggtatagaccaagcctg 180
           ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 321 gatgggaagcagtgtgggtcttacatgttctcctgtgatcgagggtagagaccaagcctg 380

                                                                 
Query: 181 ttgacttagtgtcatgctagggccagaggcgccttgtggtactatatacacttg 234
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 ttgacttagtgtcatgctagggccagaggtgccttgtggtactatatacacttg 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)