BAC Information

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BAC

Clone NameMSMg01-266B11
Chromosome8 (Build37)
Map Location 114,770,302 - 114,770,586
singlet/doubletsinglet
Overlap geneLOC100042040
Upstream geneGlg1, Rfwd3, LOC547023, Mlkl, Fa2h, Wdr59, Znrf1, Ldhd, Zfp1, Ctrb1, Bcar1, Cfdp1, Tmem170, Chst5, 4932417I16Rik, Gabarapl2, Adat1, Kars, Terf2ip, EG627828, LOC672498
Downstream geneCntnap4, LOC100042061
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266B11.T7 (MSMg01no266_b11.b1)MSMg01-266B11.TJ (MSMg01no266_b11.g1)
ACCAG407174AG407175
length728731
length of high quality
(start - end)
319 (46 - 364)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no266_b11.b1 PHD_FILE: MSMg01no266_b11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:47 2005CHROMAT_FILE: MSMg01no266_b11.g1 PHD_FILE: MSMg01no266_b11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:47 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTCATTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTT
TCTGAAGTCCACCTTCTTGAGTCCCTTATATATGTTGGATATTAGTCCCC
TATCTGATTTAGGATAGGTAAAGATTCTTTCCCAATCTGTTGGTGGTCTC
TTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCAT
TAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTC
AGTTCAGGAATTTTTCCCCTGTGTCCATATCTTCAAGGCTTTTCCCCACT
TTCTCCTCTATATTTTTCAGTGTCTCCGGCTTTATGTGAAGTTCTTTGAT
CCATTTAGATTTGACCCCACCACAAGGAGATAAGTATGAATCAATTCGCA
TTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATG
CTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTG
ACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGT
CTACTTGTCTGTCTCTATACTCAGTACCATGCAGTTTTTACCACCATTGC
TCTGCAGTAAAGCTTTATGTCAGGCATGGTGATTCCTCCATAGGTTCTTT
TATCCTTGATAACAGTCTCTGCTATCCC
TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATACCCTGACCCAGGGGTACCCCA
TACCCATAGTACACACACACACACACACACACACACACACACACACACAC
ACACACGTGCCCTTGTGAATCCACACCCTCACATAGGGGCACCCCATATC
CAGAATCCTCATATATGTGTATACCCAGGTGAATCTACATCCTGACCTAG
GGGTACCCTATATATATAGTCCACATATACATGTGTGCTCATGTGAATTT
ATTCCCTGACACAGGGATATCCCACACCCATAGTCCACATATATACATGC
ATCCGTGTGAACTCACTCCCTCTCCNAGCCGNCCCCCATATCCATATTCA
CAAAAGGATTTACTGACTCGCAAAGAAAACAAAAAACATTGGATCCCATA
GTGAATGAGAAACCGTTGTCAATACATCCTGGTTAGGAAAGTCCATGTCT
GCCAAGCACCATGGGGGAAGGTAATTCCCTTACTTCCTCTTTTAAGTCTA
ATCTCAAATATGACCATGGACCTTCTGATATCACTGCACCATAAACCAGA
GTGTCATATGACTAATCAATTTACTTCAGGACATTGATCAAGCACAGGAG
AGATGCCGATGAGGCTCTGTTGTAATCAAGCTGTTTGTTGTATGCCATGT
CTCAGGTACACATTTTATAGTACTAAGTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_b11.g1 MSMg01no266_b11.g1 CHROMAT_FILE:
MSMg01no266_b11.g1 PHD_FILE: MSMg01no266_b11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:47 2005
         (288 letters)



>mm_chr8_114770102_114770789
          Length = 688

 Score =  497 bits (257), Expect = e-145
 Identities = 278/285 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataccctgacccaggggtaccccatacccatagtacacacacacacacacacacacacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataccctgacccaggggtaccccatacccatagtacacacacacacacacacacacacac 260

                                                                       
Query: 61  acacacacacacacacacacgtgcccttgtgaatccacaccctcacataggggcacccca 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acacacacacacacacacacatgcccttgtgaatccacaccctcacataggggcacccca 320

                                                                       
Query: 121 tatccagaatcctcatatatgtgtatacccaggtgaatctacatcctgacctaggggtac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatccagaatcctcatatatgtgtatacccaggtgaatctacatcctgacctaggggtac 380

                                                                       
Query: 181 cctatatatatagtccacatatacatgtgtgctcatgtgaatttattccctgacacaggg 240
           |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 cctatatacatagtccacatatacatgtgtgctcatgtgaattcattccctgacacaggg 440

                                                        
Query: 241 atatcccacacccatagtccacatatatacatgcatccgtgtgaa 285
            || ||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 441 gtaccccacacccatagtccacatatatacatgtatctgtgtgaa 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 62
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)