BAC Information

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BAC

Clone NameMSMg01-266H13
Chromosome8 (Build37)
Map Location 58,065,828 - 58,066,114
singlet/doubletsinglet
Overlap genenone
Upstream geneGm392, LOC100040212, Gm1153, EG664808, EG664818, EG664834, EG664859, EG664876, LOC100040356
Downstream geneLOC664916, Adam29, Glra3, LOC664812, Hpgd, LOC664948, BC088983, Fbxo8, LOC100040431
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266H13.T7 (MSMg01no266_h13.b1)MSMg01-266H13.TJ (MSMg01no266_h13.g1)
ACCAG407450AG407451
length736733
length of high quality
(start - end)		315 (45 - 359)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no266_h13.b1 PHD_FILE: MSMg01no266_h13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:16 2005CHROMAT_FILE: MSMg01no266_h13.g1 PHD_FILE: MSMg01no266_h13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:16 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAGGCAAGGTACAGATAACCCTAGACACAGAGACACAGAATCCCAT
CTACAACCCTGAAATGCAAAGGTGTGGCTGTGCACCTGGTTCTATGCACC
TGTGTGGACTTCCATTGGCTACAAGGTTGTGGGAAGAAGCAGCAAGAGGC
TTTCAGCAAACAGGTGCCTCCAATAAGTTTTCCTACAAAGGAAAGGACTT
TGCCCTAAGGAGGTTCAGTGGGTGGAGGTCACATGGCTGGGTGGCCATTT
TGCAGTATGAGGAAATGTATGAGGAGAACAGATTCCATCCTGTTTTGTTT
GTTGGTTTACTTTTTTGGTTCCCGCCGCCGCCGTTGGTGTTGNTTNNNNN
NANNNNNNNNNNNNNCCCCCCAAAAAAAAAAAAAAANCCCTCTCTGCGTG
CTTTAAACNCTCTTTCCTCTTCCCTTCTTTTTTTTCTTTCCTCCTTTTCC
CCACTTTTTTCTCTCCCCCCCCCTCTCACCCCCCATCTTCTTTTCTCCTC
TCCAATCTTCTATAATCCATTCCCCCTCCTCTTCCCTCTTTCTTTTTTTT
TACCCTCTCCTTTCTCTCCCACCCTTATTTCCCCTCTCATTCTCCCCCCC
CTTTTTCCATCTTTTTCCCTCTTTTTCCCCCTTTACTACCCCCTTATTCC
CATTTTTTCCCCCTTTTTCCCCTCCCCCCCTTTCCC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTAGACCATTTCTGAGCTCAAACT
AGGGAGACTAAAGGGAACAAATATCGATTTAATAAATAGTTGAAACATAA
AAAGAAGTATCACAAAGAGGCCAGATGATACATGTTCTAAAAGCAGAAAT
AAACAGAAAACCATCTCTGATACATATTGAAGACAGTGAAATGTGTTACA
GCTGTGAATTCATGAAAACAGGTGGATGAAGTTTTGCATGGAATAAATTT
TAACTAGTTTGGACTTGATCATCTCATACCCAGCAATTTTAAGATGTCTC
AATTTAGACTGGGAATTATAACAACTACCCCAACAGTTTTTATTTAAAGT
AGCTATTTGGAGCTTTAAAAGTTAGAATTTCCTAACTATAACAGTTGTGT
TTCAAGCATGTTGATTATTTTATTATGCTCCTGATACTGGAATTTAAGTT
TTGAAAGGCACAGACAAAATAGAAATTCTAACTTCAGTCCCTGATGCTTT
CAAAACTAATGCTAGTTTTTCTTCTCTGAGTTGTTTGGTTTGGTGGTCTT
CAAGAGGATGAGATCAAAATGAGGGCTATAATTTGTTTCTGTGTTTCCCA
TCCTTGTTACAGAATCTCAGTTTGTTTTTTCAGATAATAGTGCCTAAATA
TCTCTCAAAATTATCCTTTTTCTTTTAAGTCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_h13.g1 MSMg01no266_h13.g1 CHROMAT_FILE:
MSMg01no266_h13.g1 PHD_FILE: MSMg01no266_h13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:16 2005
         (287 letters)



>mm_chr8_58065628_58066314
          Length = 687

 Score =  501 bits (259), Expect = e-146
 Identities = 280/287 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttagaccatttctgagctcaaactagggagactaaagggaacaaatatcgatttaataaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||
Sbjct: 487 ttagaccatttctgagctcaaactagggagactaaagggaacaaatatcaatcaaataaa 428

                                                                       
Query: 61  tagttgaaacataaaaagaagtatcacaaagaggccagatgatacatgttctaaaagcag 120
           |||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 427 tagttgaagcatataaagaagtatcacaaagaggccagatgatatatgttctaaaagcag 368

                                                                       
Query: 121 aaataaacagaaaaccatctctgatacatattgaagacagtgaaatgtgttacagctgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 aaataaacagaaaaccatctctgatacatattgaagacagtgaaatgtgttacagctgtg 308

                                                                       
Query: 181 aattcatgaaaacaggtggatgaagttttgcatggaataaattttaactagtttggactt 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 307 aattcatgaaaacaggtggatgaagttttgcatggaataaatttcaactagtttggactt 248

                                                          
Query: 241 gatcatctcatacccagcaattttaagatgtctcaatttagactggg 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gatcatctcatacccagcaattttaagatgtctcaatttagactggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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