BAC Information

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BAC

Clone NameMSMg01-268D24
Chromosome8 (Build37)
Map Location 92,854,889 - 92,999,537
singlet/doubletdoublet
Overlap geneTox3
Upstream genenone
Downstream geneLOC100041133, Chd9, LOC100041156, EG626231, Rbl2, Aktip, LOC667162, LOC100041222, Rpgrip1l, AJ237917
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268D24.T7 (MSMg01no268_d24.b1)MSMg01-268D24.TJ (MSMg01no268_d24.g1)
ACCAG408744AG408745
length737729
length of high quality
(start - end)
322 (46 - 367)291 (75 - 365)
definitionCHROMAT_FILE: MSMg01no268_d24.b1 PHD_FILE: MSMg01no268_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:30 2005CHROMAT_FILE: MSMg01no268_d24.g1 PHD_FILE: MSMg01no268_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,999,220 - 92,999,537)(92,854,889 - 92,855,177)
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCGTTATTATTTTTTTCCCACAATGCACATTTGTTCCCAACACAC
TCTCACTCACTTATATGACAGCATATTTATTTCGTGCCAGTGTTTGAAGG
ATATACTTTGCTGGATATAAAGCTCTGGATTGACTGTGGTTTCATTCAGC
TTTCTGAAGAACTGACCTGTTGTCTTTTGATCACTGCTTTCATATGAGTT
TGGCCAAGAAATATTATAAAATATGTCATTTTACTTTATATGTGTCAGGA
CGGTGTATGTTTTAAGTGTTCGGGAGTCTGAATATGAATTGTTTAGCTAT
AGGTTCTCTGTGTCCTGTTTATTTTACCTCACCTCATATCTTTCTTTCAT
AAAAGACATTATCACCATCATCATTATCACCATCATCATCATCATCTTTC
GTATTAGTAGTGGTATTTCTTTGTTTTTTTACATCTCTACCTTATTCTTA
ATCTCTGCTTTTTCTCTCTGGTTCCTAGAAACAATGGTATTCTGTTTATT
AAGTCACCCAAGCACTGAGTTTCTTTGTTTGTTTGTTTTTGCTTTTTGTT
TTTCAAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCCCTC
TGCAGACCAGGCTGGCTTTGAACTCAGAAATCTGCCTGCCTTTGCCTCCC
AAGTTCTGGGATTAAAGGCGTGTGCCACCACTGCCTG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGGCATAGAAGAGCAGGGAGGGTCA
CAGGGAAAGGGAGGGCTGGGAAAGGATCTAGCAGGTACACTAGGCAACTA
ACTTCTTGGAAGATGCCAGACCACTGCAATACTTCTTAGAATTTGTTCTT
TTAGATGCATTGCTTTCATGCTTACACCCTGTCAACTGTCCCCAAGGGTG
TACAAGTAGCTAATAAAACTGGAAGTAAAGAACTCTAAATGAGTAGTGTA
AAACTTTACACCTAGTTATGTACTGAGATTATCCTGCGTGCGGGCACAGT
GCACCGAGCAGAATATTTTTTATATGTGCCCCCCGCCCCTGAAAATTCAC
AGGCGAAAGGGGCTGCACTGCCTACCAAATAACNGATGAAAAATGCTGGG
GACAGCNGGGGTTCCATGAGTTTCTAAGATATATGCACAGATTATCCCTC
CAAAATAGCTTTGTGACTTAGTTTAACCACCTAAAGATGTAGGTGGGCCC
TAACTGAGTCAATTCCCTGTCGGTCAGTAGGCAAATTACAATTCCTTGAG
TGAACACAGGCTTTCTCTTTCTTGGTCCACTCAATTTGCACAGCTTTGTA
AACCCAAGAGATATTTTCATTAACCCAGAGCCATTCTCAGAGAGTAGGAA
GAAGAAAAAAAGAAGCATTTGGTAAATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_d24.b1 MSMg01no268_d24.b1 CHROMAT_FILE:
MSMg01no268_d24.b1 PHD_FILE: MSMg01no268_d24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:30 2005
         (322 letters)



>mm_chr8_92998854_92999575
          Length = 722

 Score =  600 bits (310), Expect = e-176
 Identities = 316/318 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcccgttattatttttttcccacaatgcacatttgttcccaacacactctcactca 64
           |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 684 gaattcccgttattatttttttcccacagtgcacatttgttcccaacacactctcagtca 625

                                                                       
Query: 65  cttatatgacagcatatttatttcgtgccagtgtttgaaggatatactttgctggatata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cttatatgacagcatatttatttcgtgccagtgtttgaaggatatactttgctggatata 565

                                                                       
Query: 125 aagctctggattgactgtggtttcattcagctttctgaagaactgacctgttgtcttttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aagctctggattgactgtggtttcattcagctttctgaagaactgacctgttgtcttttg 505

                                                                       
Query: 185 atcactgctttcatatgagtttggccaagaaatattataaaatatgtcattttactttat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atcactgctttcatatgagtttggccaagaaatattataaaatatgtcattttactttat 445

                                                                       
Query: 245 atgtgtcaggacggtgtatgttttaagtgttcgggagtctgaatatgaattgtttagcta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atgtgtcaggacggtgtatgttttaagtgttcgggagtctgaatatgaattgtttagcta 385

                             
Query: 305 taggttctctgtgtcctg 322
           ||||||||||||||||||
Sbjct: 384 taggttctctgtgtcctg 367


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no268_d24.g1 MSMg01no268_d24.g1 CHROMAT_FILE:
MSMg01no268_d24.g1 PHD_FILE: MSMg01no268_d24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:30 2005
         (291 letters)



>mm_chr8_92854689_92855379
          Length = 691

 Score =  559 bits (289), Expect = e-164
 Identities = 289/289 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggcatagaagagcagggagggtcacagggaaagggagggctgggaaaggatctagcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggcatagaagagcagggagggtcacagggaaagggagggctgggaaaggatctagcag 260

                                                                       
Query: 61  gtacactaggcaactaacttcttggaagatgccagaccactgcaatacttcttagaattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtacactaggcaactaacttcttggaagatgccagaccactgcaatacttcttagaattt 320

                                                                       
Query: 121 gttcttttagatgcattgctttcatgcttacaccctgtcaactgtccccaagggtgtaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttcttttagatgcattgctttcatgcttacaccctgtcaactgtccccaagggtgtaca 380

                                                                       
Query: 181 agtagctaataaaactggaagtaaagaactctaaatgagtagtgtaaaactttacaccta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtagctaataaaactggaagtaaagaactctaaatgagtagtgtaaaactttacaccta 440

                                                            
Query: 241 gttatgtactgagattatcctgcgtgcgggcacagtgcaccgagcagaa 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttatgtactgagattatcctgcgtgcgggcacagtgcaccgagcagaa 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)