Query= MSMg01no270_d06.b1 MSMg01no270_d06.b1 CHROMAT_FILE:
MSMg01no270_d06.b1 PHD_FILE: MSMg01no270_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:48 2005
(663 letters)
>mm_chr8_80508487_80509549
Length = 1063
Score = 1131 bits (585), Expect = 0.0
Identities = 642/663 (96%), Gaps = 5/663 (0%)
Strand = Plus / Plus
Query: 5 gaattcttttatttcagtttcaccctgctaacatgctctatgctcttcaactaaaaacta 64
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 205 gaattcttttatttcagtttcaccctgctaacatgctttatgctcttcacctaaaaacta 264
Query: 65 tctctatttactggtgtgttttgctaattaagtttatgttaacttacatgaatcaggaaa 124
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 265 tctctatttactggtgtattttgctaactaagtttatgttaacttacatgaatcaggaaa 324
Query: 125 atcatacatataaaaggagcaatatgtgatgcttcaatatatgaaaattttgtgtaatgt 184
| |||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 325 accatacacataaaaggagaaatatgtgatgcttcaatatatgaaaattttgtataatgt 384
Query: 185 ttaaatagaagtaaatatattcattttttaaatatacattgtttcag----ttttttttt 240
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 385 ttaaatagaagtaaatatatccattttttaaatatacattgtttcaggtttttttttttt 444
Query: 241 attgtgaccccagtctttaacagctgagccatctctcttgtccataattctttcttctaa 300
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 445 attgtgaccccagtctttaacagctgagccatatctcttgtccataattctttcttctaa 504
Query: 301 ctgacttgaagcatatagttcatttttgttttatataattaccacactgtgcaataaaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctgacttgaagcatatagttcatttttgttttatataattaccacactgtgcaataaaat 564
Query: 361 gcaagccagaacttcttacttctgattgattgcaacttacctttctcttgtcctctactg 420
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 565 gcaagccagaacttcttacttccgattgactgcaacttacctttctcttgtcctctactg 624
Query: 421 tctactctccaggcctctcgttctgctcttggcttctacaaactcagtttccttagatta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tctactctccaggcctctcgttctgctcttggcttctacaaactcagtttccttagatta 684
Query: 481 agtgtgtgaggtcatgtggtaatgtctttctgtgcctggcttatttcataaagatatgcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agtgtgtgaggtcatgtggtaatgtctttctgtgcctggcttatttcataaagatatgcc 744
Query: 541 ctctaggcctatctgcattgccatgagtcacaggatttaattcttttctgtacagcagaa 600
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct: 745 ctctaggcctatctgcattgccatgagtcacaggattttattcttttctgtacaacagaa 804
Query: 601 acattgtgtataagtgttatcattttttctttacacatccatttgctgttcaatttaatt 660
||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 805 acattgtgtataagtgt-atcattttttctttacacatccatttgcttttcaatctaatt 863
Query: 661 aat 663
|||
Sbjct: 864 aat 866
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space: 687609
Effective search space used: 687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no270_d06.g1 MSMg01no270_d06.g1 CHROMAT_FILE:
MSMg01no270_d06.g1 PHD_FILE: MSMg01no270_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:48 2005
(644 letters)
>mm_chr8_80653782_80654826
Length = 1045
Score = 876 bits (453), Expect = 0.0
Identities = 573/645 (88%), Gaps = 50/645 (7%)
Strand = Plus / Minus
Query: 1 tttcccctcaaattctcaatctgcgactagaagttgtctacatagagccctcaaggaaaa 60
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 871 tttcccctcaaattctcaatctatgactagaagttgtctacatagagccctcaaggaaaa 812
Query: 61 gaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaa 120
|||||||||| ||||||
Sbjct: 811 gaaagaaagacagaaag------------------------------------------- 795
Query: 121 gaaagaaagagtaatgtacaccgtagacctc-tctgtaactggctgtaccgtggcagcgt 179
||| ||| ||| |||| |||||||| ||||||||||||||||| || |||||||
Sbjct: 794 ------aagtgtactgtgcaccctagacctcttctgtaactggctgtactgtagcagcgt 741
Query: 180 atgtcctgtagcacagatatttcgggtgagtttcatttcactttccagggctgggctact 239
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 740 atgtcctgtagcacagatatttcgggtgagtttcatgtcactttccagggctgggctact 681
Query: 240 gaacccagattctcataatcctatgcaaagctctactgctgagccacatcatctatccca 299
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 680 gaacccagattctcataatcctatgcaaagctctactgctgagccacatcacccatccca 621
Query: 300 aggtagggctcacaggactcgtatcttggattacaacagactacattgtacaattcgaat 359
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 620 agatagggctcacaggactcgtatcttggattacagcagactacattgtacaattcaaat 561
Query: 360 gtaagtgttcttttctccaattggtcagaacatttacctggtgatatcacttcagtgggt 419
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gtatgtgttctttgctccaattggtcagaacatttacctggtgatatcacttcagtgggt 501
Query: 420 atgattcaatttctaaggcctcagctcaccatgagggatggattgtgtttcatctcctac 479
||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 500 atgattcaacttctaaggcctcagctcaccatgagggatgtattgtgttttatctcctac 441
Query: 480 agaaggcaaaacacggaagccagggctggagagagaagctagaagatgagaacattctga 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agaaggcaaaacacggaagccagggctggagagagaagctagaagatgagaacattctga 381
Query: 540 ctaggatcatgacaacctgaggttgaattccctgctagtcattgaaaacaaaaaatcaaa 599
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 380 ctcggatcatgacaacctgaggttgaattccctgctagtcatggaaaacaaaaaatcaaa 321
Query: 600 acaaaacaaacacacacaaacacaagatcaaaacaaacaaaagca 644
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 acaaaacaaacacacacaaacacaagatcaaaacaaacaaaagca 276
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1045
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1035
Effective search space: 656190
Effective search space used: 656190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
