Query= MSMg01no272_d14.b1 MSMg01no272_d14.b1 CHROMAT_FILE:
MSMg01no272_d14.b1 PHD_FILE: MSMg01no272_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:19 2005
(287 letters)
>mm_chr8_115888150_115888836
Length = 687
Score = 513 bits (265), Expect = e-150
Identities = 274/279 (98%), Gaps = 4/279 (1%)
Strand = Plus / Plus
Query: 13 cacacacacacacacacacacg----catgcacatgcacataagtaaaataaatctttta 68
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 209 cacacacacacacacacacacggatgcatgcacatgcacataagtaaaataaatctttta 268
Query: 69 aaatatgtgtgctttctgtcgaagctttagacccatatctcacctaagagaagggactat 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 aaatatgtgtgctttctgtcgaagctttagacccatatctcacctaagagaagggactat 328
Query: 129 cagtgattcaatccaatcacgtgcatgaacatccttcctgaagaaaataaaataacccca 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 cagtgattcaatccaatcacgtgcatgaacatccttcctgaagaaaataaaataacccca 388
Query: 189 gaagcaaaccaaaggacatggttgaataaaaagtgttcagtgagagggaatgtgaaggga 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gaagcaaaccaaaggacatggttgaataaaaagtgttcagtgagagggaatgtgaaggga 448
Query: 249 attatattgaaaacaattcaggaaaagcaaagcgaaatc 287
||||||||||||||||||||||||||||||||| |||||
Sbjct: 449 attatattgaaaacaattcaggaaaagcaaagcaaaatc 487
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no272_d14.g1 MSMg01no272_d14.g1 CHROMAT_FILE:
MSMg01no272_d14.g1 PHD_FILE: MSMg01no272_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:19 2005
(288 letters)
>mm_chr8_116046780_116047467
Length = 688
Score = 526 bits (272), Expect = e-154
Identities = 284/288 (98%)
Strand = Plus / Minus
Query: 1 catttagaccccttctgcgtttcgtcacttagttctcagcttttaaatggtttcactctc 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 catttagaccccttctgtgtttcgtcacttagttctcagcttttaaatggtttcactctc 429
Query: 61 cactctggtgtatcctcccctgctatgtgaatcttttcctatctttccctctcttgctct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 cactctggtgtatcctcccctgctatgtgaatcttttcctatctttccctctcttgctct 369
Query: 121 cctcatttccccttctccatcctttactacacataaggtgtgttgccataacaatcaact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 cctcatttccccttctccatcctttactacacataaggtgtgttgccataacaatcaact 309
Query: 181 tgctgatttattctcagtatctcctactagactataaattcctttgtggatagagtactg 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 308 tgctgatttattctcagtatctcctactagactataaattcctttgtggatagagtcctg 249
Query: 241 ccctgttatgtcttagatcttcagacccaagattagtgtttgcaacta 288
|||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 248 ccctgttaggccttagatcttcagacccaagattagtgtttgcaacta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
