BAC Information

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BAC

Clone NameMSMg01-273M24
Chromosome8 (Build37)
Map Location 54,181,743 - 54,308,060
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040220, LOC623935, 1190028D05Rik, LOC676688
Downstream geneAga, Neil3, LOC100040107, Vegfc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273M24.T7 (MSMg01no273_m24.b1)MSMg01-273M24.TJ (MSMg01no273_m24.g1)
ACCAG412714AG412715
length743746
length of high quality
(start - end)
311 (426 - 736)284 (65 - 348)
definitionCHROMAT_FILE: MSMg01no273_m24.b1 PHD_FILE: MSMg01no273_m24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:15 2005CHROMAT_FILE: MSMg01no273_m24.g1 PHD_FILE: MSMg01no273_m24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,307,750 - 54,308,060)(54,181,743 - 54,182,026)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAAAGAC
TTACTACCATTGGGCTGATTTCTATTGCAACATGGCATTTTTCTAATGTT
GTTTAAATGCACCAAGTAGCTATTTGCCCACAATTTATGTAACTACACAT
TGGCTAAATTACAGGTGAAAATGACTCTAACCAACTATGGGGAACAAGTC
ATTCAGTCATCTAGATGGTCATTGTATGCATATGGATTGAGCTCAGGTAT
TTTGGATAAAGAAGACTTGATTGTATTTTTAAAAGACAAATTTCATCGAC
AGATTGTGGAATTTGTTATCATATGTTGCCTTTTAATTTTGAAAATGAAT
AAAATAAACTCTATGACATANNCCTAACTTAGCACAATAGGCCAAAGAAA
GTTAGCTATTGTTAAGATAATCAACAATATTATAAAATTCAGATTCTCAT
GTGTGTGTGTACCTGAGACTGTTTACTCTGATGATTCTCAGAACAGAGTT
AATGAAACCCAAATTAATGATGTTTTTATTTACCTCTGTCCCATGATTCA
AGTTTTCCCTTGCTGGATGCAGTAGGAATCGTTCACAAGATTGCTGATTG
TCCTTAGGGAAATTAAACATTGTTATAAGCAGGCATCCCAAAACAAAAGA
CAAAGAATATCTTGATCTCATGGTTAATGTGGACATGCAGTTTGCCAGCT
GCCAAGTAAGGGAAATGAGGGCATGTCTCAGTGTGAGTCCAAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCTTTGTTATTGGACTCAAACCAAGTTTCCTGTAATG
TTGCCTGGTTGCTTTTGTCACTTCACACTTCCATTTTTCTCTTGCATAAA
GTGGAGACAGTAATAGTATTTATATTATAGAGTTGTGATAAGATTTTTTA
AAAGTTCTTTAAAAACTGCCCAGTACCTAGCAATGATGAGCATCACTACA
TATATTTTGCTGAGTCATCTTTTTATAAACAATTGTCATCAGTTTTGCCA
GTAGTGATAGTAACTCTGAAAAAAAACTAATTTGCGACTAGAAATGGNTA
TCATTTTTTTTTTCTTCTTCCGCCTTTTTTTTCTTGAATTTTAGCATTCA
CAGCTCTGTCTTGCAGACTTTTATTAATTCTGGAATTGTACTGTAGCAGG
GATAATAATATTGGGCTACATTTTCTTTTCCTTCAGTATTTTGAACATTG
TGATCCACTGTCTAAGACTTTGACTATTAGTATACAAAATTGAGACTTCA
ACCTAAATTTAACTGCTTTTAAAATAAATGCATTGGTTTATATTGTAAAA
GATATTCTAAATTTGTCCTGAATTCAACAACTTAATTTTATTAAAATTAA
GTACAGTGATCTTATGAAATGTCTATCAACAGGCTGCATTTCGATTAATT
TAATGGTACCATTGTTTTACAAATTTCCAATATAACCATAGGATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_m24.b1 MSMg01no273_m24.b1 CHROMAT_FILE:
MSMg01no273_m24.b1 PHD_FILE: MSMg01no273_m24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:15 2005
         (311 letters)



>mm_chr8_54307550_54308260
          Length = 711

 Score =  578 bits (299), Expect = e-169
 Identities = 308/311 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatattataaaattcagattctcatgtgtgtgtgtacctgagactgtttactctgatgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 aatattataaaattcagattctcatgtgtgtgtgtacctgagactgtttactctgatgat 452

                                                                       
Query: 61  tctcagaacagagttaatgaaacccaaattaatgatgtttttatttacctctgtcccatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tctcagaacagagttaatgaaacccaaattaatgatgtttttatttacctctgtcccatg 392

                                                                       
Query: 121 attcaagttttcccttgctggatgcagtaggaatcgttcacaagattgctgattgtcctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 attcaagttttcccttgctggatgcagtaggaatcgttcacaagattgctgattgtcctt 332

                                                                       
Query: 181 agggaaattaaacattgttataagcaggcatcccaaaacaaaagacaaagaatatcttga 240
           |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 331 agggaaattaaacattgttataagcaggtatcccaaaacaaaagacaaagaaaatcttga 272

                                                                       
Query: 241 tctcatggttaatgtggacatgcagtttgccagctgccaagtaagggaaatgagggcatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tctcatggttaatgtggacatgcagtttgccagctgccaagtaagggaaatgagggcatg 212

                      
Query: 301 tctcagtgtga 311
           |||||| ||||
Sbjct: 211 tctcagcgtga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no273_m24.g1 MSMg01no273_m24.g1 CHROMAT_FILE:
MSMg01no273_m24.g1 PHD_FILE: MSMg01no273_m24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:15 2005
         (284 letters)



>mm_chr8_54181543_54182227
          Length = 685

 Score =  534 bits (276), Expect = e-156
 Identities = 282/284 (99%), Gaps = 1/284 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttgttattggactcaaaccaagtttcctgtaatgttgcctggttgcttttgtcacttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttgttattggactcaaaccaagtttcctgtaatgttgcctggttgcttttgtcacttc 260

                                                                       
Query: 61  acacttccatttttctcttgcataaagtggagacagtaatagtatttatattatagagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acacttccatttttctcttgcataaagtggagacagtaatagtatttatattatagagtt 320

                                                                       
Query: 121 gtgataagattttttaaaagttctttaaaaactgcccagtacctagcaatgatgagcatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgataagattttttaaaagttctttaaaaactgcccagtacctagcaatgatgagcatc 380

                                                                       
Query: 181 actacatatattttgctgagtcatctttttataaacaattgtcatcagttttgccagtag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actacatatattttgctgagtcatctttttataaacaattgtcatcagttttgccagtag 440

                                                       
Query: 241 tgatagtaactctgaaaaaaaacta-atttgcgactagaaatgg 283
           ||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 441 tgatagtaactctgaaaaaaaactatatttgcaactagaaatgg 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 685
Length adjustment: 9
Effective length of query: 275
Effective length of database: 676
Effective search space:   185900
Effective search space used:   185900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)