BAC Information

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BAC

Clone NameMSMg01-275C09
Chromosome8 (Build37)
Map Location 124,389,387 - 124,390,004
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042333, Foxf1a, Mthfsd, Foxc2, Foxl1, 1700018B08Rik, Fbxo31, Map1lc3b, Zcchc14, Jph3, Klhdc4
Downstream geneSlc7a5, BC048644, Car5a, Banp, Gm22, Zfpm1, Trhr2, 5830416A07Rik, Il17c, Cyba, Mvd, Snai3, Rnf166, 2310061F22Rik, Cdt1, Aprt, Galns, Trappc2l, Pabpnl1, Cbfa2t3h, C230057M02Rik, A530010L16Rik, BC021611, LOC100043225, Cdh15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275C09.T7 (MSMg01no275_c09.b1)MSMg01-275C09.TJ (MSMg01no275_c09.g1)
ACCAG413681AG413682
length733736
length of high quality
(start - end)		645 (45 - 689)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no275_c09.b1 PHD_FILE: MSMg01no275_c09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:50 2005CHROMAT_FILE: MSMg01no275_c09.g1 PHD_FILE: MSMg01no275_c09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAAAGTCTAGCTGTTGGTATGTCCACCATCCCTCTCACCCACTCCA
GCTCTTGGTAGTGGGGACAGCCCTTGGTGCCCCCATCTCTGTCATGATAT
GGCCTCTCCTGTCTGTGTTTCTTATAAGAACACCAACCATTGAATTTAGG
GCCATTCTAACTGTATAAACTCACCTTAACCATTACACGTGTGATGATCT
TATTTCTAAATAACATCACATGTGAGAGTCCAGTGAGAACGGGGAAGACA
TTGTCAGACTCTGGTCCAGGCGAGCATGTGCCATTTGTAGTCAGACTGTG
GCCTGAGCAAGTGTCCCAAGCCTTCTGGGCAGTACAGAAGGAGCCTAGAG
TTCTGCCAAGTTGTGTTGGAGTCCAGCACGGGACATGCCTTTGCCATGGC
CCAGTCTTGATTCTTCTGCTCTTCAGGTTAGTGATGTTCCAGCACAGCCG
TAACTTGGCTCCAGGCAAGGCACATGAACCAGGCCAGTGATGGATAGCAT
AGCAAATCTCTTCCAATAGCAGAACACTCTGCATCATGCCGCTATGGACA
GGAAGGCCAGGCGTCAAAGGCATTTGTGCTGTGATTGAAGCCATATGGGC
CCTGGAAGATGTTTCTCCCCTGCGGCTGTGACTGCGGCAGAGCTTATTTG
TCCAGGGAACTCTGCTTCTGAGAACAGGTAAAG

CATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTTACTTCCACGAGGTAGGTGCC
ACATTCAGACCTAGGTCTTCAGGCTTGGTGGCAAGTGCCCTTACCCTCTG
AACCAGCTCACCTGCCTGAAAGACGCCAGCAAGATTCCATCGTACAAATA
GTGGGAGGGTGAGGTGTGGTGATCCATGCCTGCATCCCAGCACTCTGCAA
GTGGGAACAGGACGATCAGGAATTCAAGGACATCCTCAGCTGTACAGCAA
ATTCAAGGCCAGCCTGGGCTACAAGAGACCCTGTCTCAAAACAAAAACAA
ACAAAAAAGTAGATTTTGTATGCCCCCCTCCTGCCCCTTTAGTCCCCACT
CTAGTGTCTTAGGATTTCTGCTGCTGTGAAGAGACACCGTGACAACTCTT
TTTAAGGGACAAGATTTAATTGGGGCTGGCTTACAGTTTCAGAGGATCAG
TCCATTATCATCATAGCAGAAAGCATGGCAGCATCCAGGCAGGCATGGTG
CTGGAGAAGGAGCTAAGAGTTCTACATCTTCATCTGAAGGTAACCAGGAG
TGCCTGACCCATGGGCAGCTAGAAAGAAGCTCTGTTTCACAGTGGGTGGA
GCCTGAGCATACGAGGAGACCTTAAAGCCCACCCCACAGTGACACACTTC
CTCCAACAAGGTCACGCCCCCTAACGGTACCACTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_c09.b1 MSMg01no275_c09.b1 CHROMAT_FILE:
MSMg01no275_c09.b1 PHD_FILE: MSMg01no275_c09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:50 2005
         (645 letters)



>mm_chr8_124388960_124390004
          Length = 1045

 Score = 1149 bits (594), Expect = 0.0
 Identities = 612/618 (99%)
 Strand = Plus / Minus

                                                                        
Query: 28   tatgtccaccatccctctcacccactccagctcttggtagtggggacagcccttggtgcc 87
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1045 tatgtccaccatccctctcacccactccagctcttggtagtggggacagtccttggtgcc 986

                                                                        
Query: 88   cccatctctgtcatgatatggcctctcctgtctgtgtttcttataagaacaccaaccatt 147
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 985  cccatctctgtcatgatatggcctctcctgtctgtgtttcttataagaacaccagccatt 926

                                                                        
Query: 148  gaatttagggccattctaactgtataaactcaccttaaccattacacgtgtgatgatctt 207
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925  gaaattagggccattctaactgtataaactcaccttaaccattacacgtgtgatgatctt 866

                                                                        
Query: 208  atttctaaataacatcacatgtgagagtccagtgagaacggggaagacattgtcagactc 267
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865  atttctaaataacatcacatgtgagagtccagtgagaacggggaagacattgtcagactc 806

                                                                        
Query: 268  tggtccaggcgagcatgtgccatttgtagtcagactgtggcctgagcaagtgtcccaagc 327
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805  tggtccaggcgagcatgtgccatttgtagtcagactgtggcctgagcaagtgtcccaagc 746

                                                                        
Query: 328  cttctgggcagtacagaaggagcctagagttctgccaagttgtgttggagtccagcacgg 387
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745  cttctgggcagtacagaaggagcctagagttctgccaagttgtgttggagtccagcacgg 686

                                                                        
Query: 388  gacatgcctttgccatggcccagtcttgattcttctgctcttcaggttagtgatgttcca 447
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685  gacatgcctttgccatggcccagtcttgattcttctgctcttcaggttagtgatgttcca 626

                                                                        
Query: 448  gcacagccgtaacttggctccaggcaaggcacatgaaccaggccagtgatggatagcata 507
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625  gcacagccgtaacttggctccaggcaaggcacatgaaccaggccagtgatggatagcata 566

                                                                        
Query: 508  gcaaatctcttccaatagcagaacactctgcatcatgccgctatggacaggaaggccagg 567
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 565  gcaaatctcttccaatagcagaacgctctgcatcatgccgctatggacaggaaggccagg 506

                                                                        
Query: 568  cgtcaaaggcatttgtgctgtgattgaagccatatgggccctggaagatgtttctcccct 627
             ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 505  tgtcaaaggcatttgtgctgtgattgaagccatatgggtcctggaagatgtttctcccct 446

                              
Query: 628  gcggctgtgactgcggca 645
            ||||||||||||||||||
Sbjct: 445  gcggctgtgactgcggca 428


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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