BAC Information

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BAC

Clone NameMSMg01-277B05
Chromosome8 (Build37)
Map Location 89,898,427 - 89,898,660
singlet/doubletsinglet
Overlap genenone
Upstream geneAbcc12, Lonp2, Siah1a, ENSMUSG00000074178, BC004022, LOC666960, EG625298, EG330819
Downstream geneCbln1, LOC100040294, 4933402J07Rik, Zfp423, LOC100040328, 5033428A16Rik, Heatr3, Papd5, Adcy7, Brd7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277B05.T7 (MSMg01no277_b05.b1)MSMg01-277B05.TJ (MSMg01no277_b05.g1)
ACCAG415078AG415079
length695688
length of high quality
(start - end)
225 (139 - 363)235 (111 - 345)
definitionCHROMAT_FILE: MSMg01no277_b05.b1 PHD_FILE: MSMg01no277_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:08 2005CHROMAT_FILE: MSMg01no277_b05.g1 PHD_FILE: MSMg01no277_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTATCCCCTTTCCGGCCTGTAATCCTTCCCCCTATTATTCCA
TAAGAGTCTCCAAACTCTATTTCTGCCCCGAATAGAGAGTGTCTGTACCT
GTCTGAGTCTGCTGCTGGGTGGAGCCTCTCCGAGGACAACATGCTCCTGT
CTGCAAGCATAACAGAGTATCATTAACACTGTTAGGGATTGGCGCTTGCC
TATGGGTTAGGTCTCAAGTTAGGCTCGTTACTGGTTGGCCAGTCCCTCAG
TCTCTGCTCCCTCCTCTGTGCCTGCATTACTTTAGACAGGATAAATTTTG
GGTTGAAAGTCAAAACTGTATTGTTATCACCACCACCCCTGCGTAGGTTC
CCAGAAGGACCCTATACACCCCTTCTGGCGGTGAAATAGAAAGGTACAAG
TGTGTGGATTCAGGGACCAGCACACAGGGACTGGGTCCTGATTCTACCAT
ATGGCACCAAGCAAACTGTAAAGCGCTACCCAGGAGACTATACTTAGCAC
TTATGCTGGGACTCAGCTTCCAACAGTGACAGACACTTCACTTTGCTAAG
GTCCATACCTGTGGAAAGCAGCCACGTGGCTGGCTGGAGATCACCTTTCC
CTGTGCCCCAAGCTTCTCTGTGCTCACCATACACTGCCTGTATCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXACAAGGATTTTGCAGGTTATTATTCATAACATCTGCCACTTAC
TGTTTTCCCCCTTAAAACATCCCTTTAATGTGTATTTAATGCTTCTGATA
CAATATAATATCAAATAAGGCGTGCTTTATTATGGCAGCCGTGTTTGTGT
AACCGCACTAAAGATCCACCACAGTTGTTATCCCGAGGTGAGGCTTTATA
ACTGCCATAAAACCCTGCACAGAACTAAACTTGGCATTTAAGGATACACA
GATTTTTTTTTTCTCTTTTACTTGACTCAGAACATTGTGGAGAAAATCTT
TGTGTTTTTTCCCCCCCCCACTGAACATATTCTAGAAATAAAGCAGTGGT
CCTTGGAGACAGATTAAAAACAACCACTGTTTAGAAACAACCCTCTCCAG
CCTTCATATATGGAGCTGAACTGTTACCCCTCATGTATAGCAGGATCGTC
AGGGAGCAGCCTGTGCGTCCGGTGGCCTCTCACCATGTGAGATCCCCCTT
GCTAGGAAGCCTTGGTTATTTCCCTCAGTATATTTTTTTTAAACCCAAGA
ACATCTGCTAACAATTTCATTTTCACATTTTTACGTTGATAAAAAGATAC
TCCTCAGCCCTATATTGTCCCTCCGTTGCCACCAGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_b05.g1 MSMg01no277_b05.g1 CHROMAT_FILE:
MSMg01no277_b05.g1 PHD_FILE: MSMg01no277_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:09 2005
         (235 letters)



>mm_chr8_89898227_89898860
          Length = 634

 Score =  416 bits (215), Expect = e-121
 Identities = 230/235 (97%), Gaps = 1/235 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttaaaacatccctttaatgtgtatttaatgcttctgatacaatataatatcaaataagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 201 cttaaaacatccctttaatgtgtatttaatgcttctgatacaatataatatcaaataaga 260

                                                                       
Query: 61  cgtgctttattatggcagccgtgtttgtgtaaccgcactaaagatccaccacagttgtta 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 cgtgctttattatggcagccgtgtttgtgtaaccgcactaaagatccaccacggttgtta 320

                                                                       
Query: 121 tcccgaggtgaggctttataactgccataaaaccctgcacagaactaaacttggcattta 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcccgaggtgaggctttataactgccataaaaccctgcacagaactaaacttggcattta 380

                                                                  
Query: 181 aggatacacagattttttttttctcttttacttgactcagaacattgtggagaaa 235
           ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 381 aggatacacagattttttttt-ctcttttacttgactcagtacattgtggagaaa 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 634
Length adjustment: 9
Effective length of query: 226
Effective length of database: 625
Effective search space:   141250
Effective search space used:   141250
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)