XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTGTTCAGTTCTGAGCCCCACTTTTTAATGGAGTTATTTGATGAACCAA
AGCAGAAGTATCATTTTCTCCCCTTAACGAAACATGAACACATTGATCCC
AGACAGAGAAAGTCACACTGCAGAGCAGCTTGGGGAATTTGAGGACATTA
CCCTAATTATATAGTTAATTACATAGGACAAAGACTACAACATTCCAGTA
ATCCAACGCTTTAGTTAGTAAAATCTACAGAAGCAAATAGAATAGTGATC
TGATTAGCAATGTAGAGAAAAAAGTAAGGTATTTCTAGTTAATGTTTATA
GTATTTCAACTATGCTGAATGGCCACGCCACATAGATATACCATCATCAA
CTTCCTAGATATAAATTCTCTAAACAGTGTTAAAACTCTGAGAGTTTATA
ATTCATATTATGTTAATTTTGTTTCTTAGGAAGAAAATACACATATAACT
AAAATAATTTAATTATAGAATTCTTAATTATTATTTATGTAAATATATAT
ATATCTATATTATTTCCAAATACTAACTTTTAGGGACCTTTACATTTCAA
AGATTGGAAATAATGCTAGGTATGTTTGTGCAGTTCATTTTTTAAAAGTA
ACTGTATGAGACTGCTAAGAAATAGAATAGTCTTTCAAGCTTTAATAACC
TCCCAAGTAATGTTAAATTGGTACCTATTAAACCGG

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATAGCATATTTCTGAAGGAACTCT
GTTATTTTAACAACAAGAAGGTTACTGACAAGAAACATACAGTTTCAGAA
GAAGAAGACACAGTTCAATAATAAAGGCAACAGTTCCAACTTTGATATGT
AGCTCAGTTGGAGGAATACTTACAGGAGCCAGAAGCTATGGATAAATATA
AGATAAGAATGTTTTCTGCATACAGCAGTGTGGAAGAACATGTGAATCCA
CAGCAGTTATGACAGCTTAACAAGACCTGTGACACTTAAAGGTAGACAAA
AATCCCAGAATGGAGACTAGTCTAGGCATGACGCACCGCCGACTCAGAAG
ATATAGACATATGAGAGATGTTGGGAAAACATCAGATTTGTTTAAGGTTT
TGGCTCCAAGTAGACTGATTATAATCCAATAGAAGACCACACACCCAAGC
CTGTATATGCATCACAAATTAGACTTAATGGGTTTAAAATGGAAAAGAGG
ACAAAAAGTTTTGTGGGTATTAAAGCAGAGTATATCTGGGCAGAGCTGGG
CAAGTAAATAAATATTATTAAGTTACTTTGCATGCATAAAATTCTCAAAA
AATAATAAGACAAGACAGATGAATCANAAAATTCTGAAAAAACATAACCA
GTGAGTCCACCAATTGAGGGATAAGGCTATGCATCCACCTC

Query= MSMg01no277_n03.b1 MSMg01no277_n03.b1 CHROMAT_FILE:
MSMg01no277_n03.b1 PHD_FILE: MSMg01no277_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:01 2005
         (324 letters)



>mm_chr8_58277490_58278213
          Length = 724

 Score =  487 bits (252), Expect = e-142
 Identities = 261/264 (98%)
 Strand = Plus / Minus

                                                                       
Query: 52  atgaaccaaagcagaagtatcattttctccccttaacgaaacatgaacacattgatccca 111
           ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 517 atgaaccaaagcagaagtatcattttctttccttaacgaaacatgaacacattgatccca 458

                                                                       
Query: 112 gacagagaaagtcacactgcagagcagcttggggaatttgaggacattaccctaattata 171
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gacagagaaagtcacactgcagagcagcttggggaatttgaggacattaccctaattata 398

                                                                       
Query: 172 tagttaattacataggacaaagactacaacattccagtaatccaacgctttagttagtaa 231
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tagttaattacataggacaaagactacaacattccagtaatccaacgctttagttagtaa 338

                                                                       
Query: 232 aatctacagaagcaaatagaatagtgatctgattagcaatgtagagaaaaaagtaaggta 291
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 337 aatctacagaagcaaatagaatagtgatctgattagcagtgtagagaaaaaagtaaggta 278

                                   
Query: 292 tttctagttaatgtttatagtatt 315
           ||||||||||||||||||||||||
Sbjct: 277 tttctagttaatgtttatagtatt 254


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no277_n03.g1 MSMg01no277_n03.g1 CHROMAT_FILE:
MSMg01no277_n03.g1 PHD_FILE: MSMg01no277_n03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:01 2005
         (292 letters)



>mm_chr8_58111376_58112067
          Length = 692

 Score =  547 bits (283), Expect = e-160
 Identities = 289/291 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atagcatatttctgaaggaactctgttattttaacaacaagaaggttactgacaagaaac 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 atagcatatttctgaaggaactctgttattttaacaacaagaaggttactgaaaagaaac 260

                                                                       
Query: 61  atacagtttcagaagaagaagacacagttcaataataaaggcaacagttccaactttgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atacagtttcagaagaagaagacacagttcaataataaaggcaacagttccaactttgat 320

                                                                       
Query: 121 atgtagctcagttggaggaatacttacaggagccagaagctatggataaatataagataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgtagctcagttggaggaatacttacaggagccagaagctatggataaatataagataa 380

                                                                       
Query: 181 gaatgttttctgcatacagcagtgtggaagaacatgtgaatccacagcagttatgacagc 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 gaatgttttctgcatacagcagtgtggcagaacatgtgaatccacagcagttatgacagc 440

                                                              
Query: 241 ttaacaagacctgtgacacttaaaggtagacaaaaatcccagaatggagac 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaacaagacctgtgacacttaaaggtagacaaaaatcccagaatggagac 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)