BAC Information

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BAC

Clone NameMSMg01-278G07
Chromosome8 (Build37)
Map Location 58,197,560 - 58,198,048
singlet/doubletsinglet
Overlap genenone
Upstream geneGm392, LOC100040212, Gm1153, EG664808, EG664818, EG664834, EG664859, EG664876, LOC100040356
Downstream geneLOC664916, Adam29, Glra3, LOC664812, Hpgd, LOC664948, BC088983, Fbxo8, LOC100040431, EG624433
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278G07.T7 (MSMg01no278_g07.b1)MSMg01-278G07.TJ (MSMg01no278_g07.g1)
ACCAG416030AG416031
length709822
length of high quality
(start - end)
489 (116 - 604)281 (131 - 411)
definitionCHROMAT_FILE: MSMg01no278_g07.b1 PHD_FILE: MSMg01no278_g07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:42 2005CHROMAT_FILE: MSMg01no278_g07.g1 PHD_FILE: MSMg01no278_g07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGATG
TTTTCGTATAAAAATCTATGACTGATAAGAAAGCAAAACATTTTGAGGAA
ATAGAGTGTACTTAAAGGATATAATAAGCACATGTAAGCACATCCAGTGT
GTCTCCAGATGTGACTCATATAATATAATATTTAAATAGAATATAAAGTC
CAATATAATATGTAAACATTGCAGTATACTTTGAAGTTTTCATGACTCTT
AACTCACAACAGCAATTCAGCACAATAATATACATTAAAAATATTTTAGT
TGATTCATTGTGTTTATAACTCTTACCCAAGCTGTAGATAAGATATTCTT
ATTATTTTAGCTGACTCTTCCTTACCTATAAGAATATTTTAATTAGTACA
AGGGTATTTTGAGTCTAATTTTAATTAGTATAAGGATATTTTTGAGTCTA
CTAAGATCAAATTTTCATGTATCTTATAATCTACAAAACCCTCTAAATTT
ATGTCCCTTTACTTCACCTATATCTTGGTGCATTTTTGTGAAAGAACATT
TAGATAGGCAGCTGTGATTTCCATAAATGAACATCTGTGTGAAGTTAACA
CTGAGAAAGTAGAATACATCACTACATGTCATTAAGCTGGTTATAATTTG
AAAAATCATATAATGGAAAGAAGTCATTTTAAAATGCAAACTGATGCTGC
AAGCTATAT
TTTTTTTTTTTTTTTCTTTTTTTATTTTTTTTCTTACTATATTTCCCCNT
TTTTCTATGATATTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATTGTATGCTTTAAATATG
CTTTAATTACTGGCCTGTTTATTGCCATGTATAGAAAATTCTTTAAATTT
TCTGTGTAATATATATATATATATATATATATATAAATAAGTGATATTTA
AAGATTCCTTGTACAGCACAATTATACACTCTACTTCCCAAAGGATACTA
TAAATAAAAGTACATAAAAGTAACATTGTATGGACTGAACAGGTTATATT
TGTGTGTGTGTGTGTGTGTTTGTTTGTATTTACACATGCACATAAATATA
TGTCTGTAATATTAATTATTGAACCCCCCCCCCCATCAATTTGAAGGAGT
GCTCATGGGGGCATATTGGAGATGGTGAAGAAAAAAAATGAAAGGAAAAA
TTTAATTGCTAATATTATAATAACTAAATAATAGTGTTGATATTTCCTTG
CATCCACTTTTATTCTGTTGCTTATATTACTTTACCTCGAAACTGTAATT
GTTGCCCATCGTTGTTTAAGCTTGGTACACCATCTTCAAATTTTACCCCT
ACCCCACAAAATATGCTTTATATCTACTGGCTAAAAAATTCTTACATTAT
TTTATTTAATATCCACTAAAATTAATTGTCTTTTTTATTTTAGCAACGGA
ATTTTTTTTTTTATTTTTTATTTCTGTACATAAATTTTTTTTAGCGAATT
TTTTATTTAACTTCCATTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_g07.b1 MSMg01no278_g07.b1 CHROMAT_FILE:
MSMg01no278_g07.b1 PHD_FILE: MSMg01no278_g07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:42 2005
         (489 letters)



>mm_chr8_58197278_58198166
          Length = 889

 Score =  915 bits (473), Expect = 0.0
 Identities = 485/489 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggatataataagcacatgtaagcacatccagtgtgtctccagatgtgactcatataata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 aggatataataagcacatgtaagcacatccagtgtgtctccagatgtgactcatataata 712

                                                                       
Query: 61  taatatttaaatagaatataaagtccaatataatatgtaaacattgcagtatactttgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 taatatttaaatagaatataaagtccaatataatatgtaaacattgcagtatactttgaa 652

                                                                       
Query: 121 gttttcatgactcttaactcacaacagcaattcagcacaataatatacattaaaaatatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 gttttcatgactcttaactcacaacagcaattcagcacaataatatacattaaaaatatt 592

                                                                       
Query: 181 ttagttgattcattgtgtttataactcttacccaagctgtagataagatattcttattat 240
           || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 591 tttgttgattcattgtgtttataactcttacccaagctgtagataagatattcttaatat 532

                                                                       
Query: 241 tttagctgactcttccttacctataagaatattttaattagtacaagggtattttgagtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 tttagctgactcttccttacctataagaatattttaattagtacaagggtattttgagtc 472

                                                                       
Query: 301 taattttaattagtataaggatatttttgagtctactaagatcaaattttcatgtatctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 taattttaattagtataaggatatttttgagtctactaagatcaaattttcatgtatctt 412

                                                                       
Query: 361 ataatctacaaaaccctctaaatttatgtccctttacttcacctatatcttggtgcattt 420
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 ataatctaaaaaaccctctaaatttatgtccctttacttcacctatatcttggtgcattt 352

                                                                       
Query: 421 ttgtgaaagaacatttagataggcagctgtgatttccataaatgaacatctgtgtgaagt 480
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ttgtgaaagaacatttagatgggcagctgtgatttccataaatgaacatctgtgtgaagt 292

                    
Query: 481 taacactga 489
           |||||||||
Sbjct: 291 taacactga 283


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space:   421041
Effective search space used:   421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)