BAC Information

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BAC

Clone NameMSMg01-278G18
Chromosome8 (Build37)
Map Location 113,338,131 - 113,530,633
singlet/doubletdoublet
Overlap geneSf3b3, Cog4, Fuk, St3gal2, Ddx19a, Ddx19b
Upstream geneAp1g1, Phlppl, Marveld3, LOC100041884, Tat, Chst4, Zfp612, Gm1467, Calb2, BC025546, Hydin, LOC672398, Vac14, BC060632, 2010004A03Rik
Downstream geneAars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1, Rfwd3, LOC547023, Mlkl, Fa2h, Wdr59, Znrf1, Ldhd, Zfp1, Ctrb1, Bcar1, Cfdp1, Tmem170, Chst5, 4932417I16Rik, Gabarapl2, Adat1, Kars
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278G18.T7 (MSMg01no278_g18.b1)MSMg01-278G18.TJ (MSMg01no278_g18.g1)
ACCAG416050AG416051
length693694
length of high quality
(start - end)
310 (46 - 355)264 (428 - 691)
definitionCHROMAT_FILE: MSMg01no278_g18.b1 PHD_FILE: MSMg01no278_g18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:45 2005CHROMAT_FILE: MSMg01no278_g18.g1 PHD_FILE: MSMg01no278_g18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,530,329 - 113,530,633)(113,338,131 - 113,338,394)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTGTCGACTCCTGGCCAACTTTGATCTATTTTAGGAGTCTTAAA
AGGAAAGAATAAACTTTCTCTCCCAAAATACTGTGGATCAAACTTGAAAT
AAGTGAAAACAAGAACTGTGGTTAGAGAAGTGTATGACTCTTCCCTGAGT
CTGAGAAGGAGACTGGGCAAGGCGAGCAGCAGCCTCTCCAGTGGCTTCTG
GTGGGAGTGTAGATCAACACTCCTAACCTAGTGTCCTGCACCTCGGAGAA
TACTGGATGGGTTTCATGGTGTCTGTGAAGTTATATACATTAGTTTAAGG
TTTATTATCTTCTTACCAACACTCCCAAAAGATTTTCCACCTTTTAAAAA
GGTGAGTCCTACATTGTGGATGGCTCTGGCATGTCACTAGTGTCATGTGG
ACCATACTCCTTCCCAGCCCACACTCACTCCTGCCACCATCTATTTCCCA
GGGGCAGATTAGCACTGTCTGGAGCCTTAAGAATGTATTGAGCTTACAGA
GCCTTGATCCCAGGGATTTGACTGTTATGTATCTATGGAGTGAGAAAATG
AGCTCTTGGACGAAGGAGCTCAGGGAAAGAAAGAAGGGAGAAGCTCAGGG
AAAGACATATTTTTGTGTAATGAAAAGTTTTGTGATGCTCATT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGAATCTAAAAGCCCAGCTTTCCC
TAACTACAACACAACGTGCATACATCAAAAAACACCGATCTATAGTAAGT
ACTGAAGGCTAGGAGTTACTATGGGAGTAAGGGTGGAATGGGATTCTGGA
GTTTTAAGGACAGGTCCATATGCACGCTGAGCAAACGCTCTACCACGGAG
CTACAGCACCGGTCCTTATTTGGCTTAATTTTCTTTAATTGTGTATGTGT
ACTCCATGCACAAGATGTTTCAGAGGATGACTCCGTCCACTATGAAGGTC
CCATTTATTCAATTCCAGNCCTAAGCCTGGTAGCAACTGCCTTAACCTGT
TGATCCATTTTATGGAATCAAATATGGCTTTTTGAGAGAGGGTCTCCATG
TACCCCAGCTGGCCTTGAACTTACGGTTCTCCTGCCTGGGCTTCCTCAGT
GCTTGGATAATGGGAGTTCACTACTACACCTATAGAAGCTATTTTCTGTG
AATCGTGGAAATACATGTTTAACTCTCCTAGTTAAATTCTTTCTAAGTCA
GGATAGGAAGCTCTTTTGGAGGAGCTAAGAACCAAGAGATGAGATCACCT
ACTGCCTTTCAAGACACTCTCAATAAATGATTTTAAGAACTGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_g18.b1 MSMg01no278_g18.b1 CHROMAT_FILE:
MSMg01no278_g18.b1 PHD_FILE: MSMg01no278_g18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:45 2005
         (310 letters)



>mm_chr8_113530125_113530834
          Length = 710

 Score =  551 bits (285), Expect = e-161
 Identities = 300/305 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctgtcgactcctggccaactttgatctattttaggagtcttaaaaggaaagaa 64
           ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gaattctctgtgggctcctggccaactttgatctattttaggagtcttaaaaggaaagaa 450

                                                                       
Query: 65  taaactttctctcccaaaatactgtggatcaaacttgaaataagtgaaaacaagaactgt 124
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 taaactttttctcccaaaatactgtggatcaaacttgaaataagtgaaaacaagaactgt 390

                                                                       
Query: 125 ggttagagaagtgtatgactcttccctgagtctgagaaggagactgggcaaggcgagcag 184
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 agttagagaagtgtatgactcttccctgagtctgagaaggagactgggcaaggcgagcag 330

                                                                       
Query: 185 cagcctctccagtggcttctggtgggagtgtagatcaacactcctaacctagtgtcctgc 244
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 cagcccctccagtggcttctggtgggagtgtagatcaacactcctaacctagtgtcctgc 270

                                                                       
Query: 245 acctcggagaatactggatgggtttcatggtgtctgtgaagttatatacattagtttaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 acctcggagaatactggatgggtttcatggtgtctgtgaagttatatacattagtttaag 210

                
Query: 305 gttta 309
           |||||
Sbjct: 209 gttta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no278_g18.g1 MSMg01no278_g18.g1 CHROMAT_FILE:
MSMg01no278_g18.g1 PHD_FILE: MSMg01no278_g18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:45 2005
         (264 letters)



>mm_chr8_113337931_113338594
          Length = 664

 Score =  503 bits (260), Expect = e-147
 Identities = 263/264 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttttgagagagggtctccatgtaccccagctggccttgaacttacggttctcctgcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttttgagagagggtctccatgtaccccagctggccttgaacttacggttctcctgcct 260

                                                                       
Query: 61  gggcttcctcagtgcttggataatgggagttcactactacacctatagaagctattttct 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 gggcttcctcagtgcttggataatgggagttcactactacacctatagaaactattttct 320

                                                                       
Query: 121 gtgaatcgtggaaatacatgtttaactctcctagttaaattctttctaagtcaggatagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgaatcgtggaaatacatgtttaactctcctagttaaattctttctaagtcaggatagg 380

                                                                       
Query: 181 aagctcttttggaggagctaagaaccaagagatgagatcacctactgcctttcaagacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagctcttttggaggagctaagaaccaagagatgagatcacctactgcctttcaagacac 440

                                   
Query: 241 tctcaataaatgattttaagaact 264
           ||||||||||||||||||||||||
Sbjct: 441 tctcaataaatgattttaagaact 464


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 664
Length adjustment: 9
Effective length of query: 255
Effective length of database: 655
Effective search space:   167025
Effective search space used:   167025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)