BAC Information

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BAC

Clone NameMSMg01-278M04
Chromosome8 (Build37)
Map Location 108,770,682 - 108,771,202
singlet/doubletsinglet
Overlap genePrmt7
Upstream geneD230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os
Downstream geneSmpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278M04.T7 (MSMg01no278_m04.b1)MSMg01-278M04.TJ (MSMg01no278_m04.g1)
ACCAG416305AG416306
length732733
length of high quality
(start - end)		528 (44 - 571)---
definitionCHROMAT_FILE: MSMg01no278_m04.b1 PHD_FILE: MSMg01no278_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:11 2005CHROMAT_FILE: MSMg01no278_m04.g1 PHD_FILE: MSMg01no278_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAAGATCCGCGG
AATTCCTTCAGTTACCCCTCTCTGAAGCGCCTGCATGCACCTAACCGCGG
CTTCTTTCCAGTGACGACTGCCCCCTCCCCTGTTTGTGTCCTTCTTCTGT
TCTGCTGTCCTCTGTGTCCTCAGGAGCATGCTCATTTGTTAACTGAGGGA
ATGAATGAGTAAATGAATGAGTGAATGAATGGACGGAGAGACGGACCGTT
ACATGCTCCCGTGAAATTGCCGAGTGCCCCTCACGTGTTAGCTTCACTCC
TGACACTTGGTTTTTCCTGTCCTGTTGCCAGGTCTCCCTCCTCCTGGGTG
AACCCTTTTTCACTATCAGCCTGCTGCCATGCCACAACCTGTACTTCTGG
TATGTCCGTACCTCTGTGGACCAGCACTTAGCACCTGGAGCTGTGGTGAT
GCCTCAGGCTGCCTCACTGCATGCCGTGATTGTGGAGTTCAGGGTAGGTG
ACCCAGGACTCTATGGAAAAGCAACAGGGTGGGGAGGCTGAGTGCCCGAG
AGTCCTTGAGTGCAGAGGGAGCAGCTTGCGCCCTGCCGACGACACTTTTC
TTTTCTGCATCAGTGGCTGCACTTTTAAAAAGCAGTAATTTGACATATGC
AATGGAAATGACTGTGTGTTGCCATTTTACCATTGTGGCATATCGTAATA
ATTAAAGACATAAATTAAGTGTTTCAGGAGGC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXATGATCTTTTCGTGAATTTTATCATCAAGGGGTGTTGGATTTT
GAAAAATGCTTTTCAGTATCTAATGAGATGATCAAGTTGGTTTTCTCTTT
GAGTTTCTTTATATAAAAGATGATGTTGATGGAAATCCAGATATTAAACC
ATCCCTGCATCCCTGAGAAGAAACTACTTGGACAAGATGGATGATCGTTT
TGATGTGTTCTTGGATTCAGATTGCAAGGATTTTATTGAATATTTTTACA
TCGATATTCTTTTTTTTTTTACTTTAACAGCCCTGAAGAGCATTTTCACT
GGTTACTCGNACANGCTCTTACTAATACTTTCTTTTTTTCAATTTTTTAT
TAGGCATTTAAATAAAAACATTTCCGATGCTATATCAAAAGTCCCCCTTA
TTCATTTATCTAAGATATCTTACTCTTCTGTCGCTCTTGTCGACACATAT
GATATGTTGTTTGGAGCCTTTATGTTATTGGCTTCTCAAAGGTCCTTCCT
TGTTGTTGAGAGTTGTTTATTACTGCCCTTCGTCACTAATGTAGCTTTGT
AGGGAGAGAACCAGTTTTAATGTTGCAAATTGTAACGACGCCGCCTCTTC
TGATTTGTGCGGTATCAACTTTCATGGTTTTTGAAATATTATTGTTTTAA
ATATTATTCTTATGGTTTATATCTTGTCAATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_m04.b1 MSMg01no278_m04.b1 CHROMAT_FILE:
MSMg01no278_m04.b1 PHD_FILE: MSMg01no278_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:11 2005
         (528 letters)



>mm_chr8_108770476_108771402
          Length = 927

 Score =  917 bits (474), Expect = 0.0
 Identities = 510/522 (97%), Gaps = 1/522 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattccttcagttacccctctctgaagcgcctgcatgcacctaaccgcggcttctttcc 66
           ||||||||||||  | ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 207 gaattccttcaggaagccctctctgaagcgcctgcatgcac-taaccgcggcttctttcc 265

                                                                       
Query: 67  agtgacgactgccccctcccctgtttgtgtccttcttctgttctgctgtcctctgtgtcc 126
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 266 agtgacgactgccccctcccctgtttgtgtccttcctctgttctgctgtcctctgtgtcc 325

                                                                       
Query: 127 tcaggagcatgctcatttgttaactgagggaatgaatgagtaaatgaatgagtgaatgaa 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tcaggagcatgctcatttgttaactgagggaatgaatgagtaaatgaatgagtgaatgaa 385

                                                                       
Query: 187 tggacggagagacggaccgttacatgctcccgtgaaattgccgagtgcccctcacgtgtt 246
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tggacggagagacggactgttacatgctcccgtgaaattgccgagtgcccctcacgtgtt 445

                                                                       
Query: 247 agcttcactcctgacacttggtttttcctgtcctgttgccaggtctccctcctcctgggt 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 agcttcactcctgacacttggtttttcctgtcctgttgccaggtctccctcctcctgggt 505

                                                                       
Query: 307 gaaccctttttcactatcagcctgctgccatgccacaacctgtacttctggtatgtccgt 366
           |||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 506 gaaccctttttcaccaccagcctgctgccatggcacaacctgtacttctggtatgtccgt 565

                                                                       
Query: 367 acctctgtggaccagcacttagcacctggagctgtggtgatgcctcaggctgcctcactg 426
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 acctctgtggaccagcacctagcacctggagctgtggtgatgcctcaggctgcctcactg 625

                                                                       
Query: 427 catgccgtgattgtggagttcagggtaggtgacccaggactctatggaaaagcaacaggg 486
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 626 catgccgtgattgtggagttcagggtaagtgacccaggactctatggaaaagcaacaggg 685

                                                     
Query: 487 tggggaggctgagtgcccgagagtccttgagtgcagagggag 528
           ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 686 tggggaggctgtgtgcccgagagtccttgagtgcagagggag 727


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 927
Length adjustment: 10
Effective length of query: 518
Effective length of database: 917
Effective search space:   475006
Effective search space used:   475006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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