Query= MSMg01no279_h04.b1 MSMg01no279_h04.b1 CHROMAT_FILE:
MSMg01no279_h04.b1 PHD_FILE: MSMg01no279_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:02 2005
(274 letters)
>mm_chr8_47304796_47305466
Length = 671
Score = 422 bits (218), Expect = e-122
Identities = 257/270 (95%), Gaps = 3/270 (1%)
Strand = Plus / Plus
Query: 5 gaattcataattatgacctgggacaagggcgaggcaggggagaccctgaatcctaagaat 64
|||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 205 gaattcataattattagctgggacaagggagaggcaggggagaccctgaatcctaagaac 264
Query: 65 ggtcacgaaagaaactcgctctcagaaggccttctgtggaaactgagtcaggctgacacg 124
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||| || |
Sbjct: 265 ggtcacgaaagaaact-gctctcaggaggccttctgtggaaactgagtcaggctggcatg 323
Query: 125 ggttgcttgagacaaggtagcatggacgccatccagccctagatgccaactcaccnctaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 324 ggttgcttgagacaaggtagcatggacgccatccagccctagatgccaactcacc-ctaa 382
Query: 185 tactgggtagaccttgcacttcctcaagatgggcatacagcttcccttttctcatggatc 244
|||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 383 tactgg-tagaccttgcacttcctcaagatgggcatacagcttcctttttctcacggatc 441
Query: 245 tcaggactcctccttgctttatccaagaca 274
||||||| ||||||||||||||||||||||
Sbjct: 442 tcaggacccctccttgctttatccaagaca 471
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 671
Length adjustment: 9
Effective length of query: 265
Effective length of database: 662
Effective search space: 175430
Effective search space used: 175430
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no279_h04.g1 MSMg01no279_h04.g1 CHROMAT_FILE:
MSMg01no279_h04.g1 PHD_FILE: MSMg01no279_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:02 2005
(249 letters)
>mm_chr8_47476632_47477280
Length = 649
Score = 458 bits (237), Expect = e-133
Identities = 246/249 (98%)
Strand = Plus / Minus
Query: 1 actgtgtagagtgtataagcacatactccgagtcctgcgtccaccccttgagtgctgggg 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 449 actgtgtagagtgtataagcacatactccgagtcctgcgttcaccccttgagtgctgggg 390
Query: 61 ttatagtgagcacatcacagccagctgtatcccaataagggtttgcctggatcaaagcta 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ttatagtgatcacatcacagccagctgtatcccaataagggtttgcctggatcaaagcta 330
Query: 121 accctgagacacgatgcaatgaggatacaaagccagggagtaaagacacctgaacagctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 accctgagacacgatgcaatgaggatacaaagccagggagtaaagacacctgaacagctt 270
Query: 181 tctaaccagagttctgccttgctaagacaacactggcaggaacctaagcccggtccgaag 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 269 tctaaccagagttctgccttgctaagacaacactggcaggaacctaagtccggtccgaag 210
Query: 241 cttaaattc 249
|||||||||
Sbjct: 209 cttaaattc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
