BAC Information

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BAC

Clone NameMSMg01-279H20
Chromosome8 (Build37)
Map Location 118,676,508 - 118,676,793
singlet/doubletsinglet
Overlap genenone
Upstream geneWwox, Maf
Downstream geneLOC384868, LOC668233, Dynlrb2, Cdyl2, LOC100043053, 2310061C15Rik, 2610510J17Rik, BC060631, 1700030J22Rik, Gcsh, Pkd1l2, Bcmo1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279H20.T7 (MSMg01no279_h20.b1)MSMg01-279H20.TJ (MSMg01no279_h20.g1)
ACCAG416841AG416842
length840753
length of high quality
(start - end)
273 (45 - 317)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no279_h20.b1 PHD_FILE: MSMg01no279_h20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:05 2005CHROMAT_FILE: MSMg01no279_h20.g1 PHD_FILE: MSMg01no279_h20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATGGTCCCTTACCTCTGACTAAGGATCCGTGGAGAGGTGGTGGCTT
CTGGGAAAGGGAGCATCAGTTTCCTTTGAGGGCATAGCCTCGGGGAGCTG
ACCGCCTCCAACAGATGGTATCACACCTAGTAGGTATAAGCAGGCAAATT
GTGTGCAGTGGGTTATAGAAGAAATAGTGCACATGTGGTCCTGGAGAGAG
GGAGTTGGAAGGCTGGATCTGCAGAGAGTAAGGGGGAGGAGTGGGGAGTG
AAGGTGATAAAATGTTTTTTTTTTTTTTNATTATATAANAAAAAANAAAA
AAAAAATTTTTTTAATAATTTTCCCCCCANACANAACCCCTTTTTTTTTT
TTTATATATTTATTGGTTGTTTGTCCTCCCCCTAAAAAAAAAAAAAAAAA
AAAATTCTTGGTGGGGGGGGGGTGTTATCATCATATCTTCATACTTACGT
ATTCTCCCCATTTTCTATTTCATATAAGTTTACAATATTTATTCCTTTGA
GTTTTATTTTCGTATTCTTCTTTTTCTATACTTTTTACTACATCTCTTCT
TTTTATTCTTACTACTCTTTTTTCTCTTTCCTTTTTCTAGTGTTAATTTT
CTACCCGCTTTATATGATATGTCGTTTTTATAAGAGTCATTACAATTATC
TTACCCTCGCTTTCATAATTATATTTAAAGCATATATAATTTCGCATTAT
TATATCTACGCCCTTCCTCTTCACTATATATATAAAATCTTGACCACTAC
TATTTATATTTATCCTTCATTATTTTTCTTTTCTCATCCN
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTTAGACAACTTTGATGAAGTTG
AGTATTAAGGAGAGTATTCTTAGACTTAAAAAAAAAGAGGAAACCAGAAA
GAATAAATTGATAAAAATAATATGCAAAATTAAAGAACTTGGTCTGGGAT
GATGGCAGAGTTAAGTGCCTGGGCAAGTGTGAGGACTTGAGCTTAGATTC
CCCAGGATCGACACAAAAGCTGAATGTACATCTGTAACCCCAGGACTATT
TGGGGATGCATGGATGAGATAAGTGATTCTCTATAGCCCATTGGCCAGCC
ATCCTAGCCAAATGTTTTTTTTCACACCCCCCCCCGCTGTGTCTCAAAAA
AGAAAAAAGAAAGTGGGGGAGGAGATGGGACAAGCAAGAAAGGTGGGCAT
TCAGAGGAGCACTGCTAGGGGCGGAATTCTCAACAGGACATGGCTATTGT
CACCATTAACACACAGCAACTGTGGTTACTGGAGCAAGACCTGTACAAGA
TCAAGCCAGTCAAAATTGCCACACAGCCTGGTGACCCCAACCCTTACCAA
GGAGCTATTGCAGTGGTCTGTGACTGGGGAAGGAGAATCATTCATTTCTG
AGTGTGTGGATGCTCCCAAGTGTGTGGATGATGGCTCTGCCACTGGTCAA
TAGAAAAAGCACTGACTAGATGTGGTAGGTTGTCAGAAGAAGAAAATGAG
TCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_h20.g1 MSMg01no279_h20.g1 CHROMAT_FILE:
MSMg01no279_h20.g1 PHD_FILE: MSMg01no279_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:05 2005
         (287 letters)



>mm_chr8_118676481_118677166
          Length = 686

 Score =  547 bits (283), Expect = e-160
 Identities = 286/287 (99%), Gaps = 1/287 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttagacaactttgatgaagttgagtattaaggagagtattcttagacttaaaaaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 313 tcttagacaactttgatgaagttgagtattaaggagagtattcttagactt-aaaaaaaa 255

                                                                       
Query: 61  gaggaaaccagaaagaataaattgataaaaataatatgcaaaattaaagaacttggtctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gaggaaaccagaaagaataaattgataaaaataatatgcaaaattaaagaacttggtctg 195

                                                                       
Query: 121 ggatgatggcagagttaagtgcctgggcaagtgtgaggacttgagcttagattccccagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 ggatgatggcagagttaagtgcctgggcaagtgtgaggacttgagcttagattccccagg 135

                                                                       
Query: 181 atcgacacaaaagctgaatgtacatctgtaaccccaggactatttggggatgcatggatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 atcgacacaaaagctgaatgtacatctgtaaccccaggactatttggggatgcatggatg 75

                                                          
Query: 241 agataagtgattctctatagcccattggccagccatcctagccaaat 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74  agataagtgattctctatagcccattggccagccatcctagccaaat 28


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 686
Length adjustment: 9
Effective length of query: 278
Effective length of database: 677
Effective search space:   188206
Effective search space used:   188206
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)