BAC Information

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BAC

Clone NameMSMg01-279K14
Chromosome8 (Build37)
Map Location 127,789,442 - 127,943,823
singlet/doubletdoublet
Overlap geneSipa1l2
Upstream geneGalnt2, Pgbd5, Cog2, Agt, Capn9, 2310022B05Rik, Ttc13, Arv1, 2310031A18Rik, LOC668444, Trim67, 2810004N23Rik, Gnpat, Exoc8, Gm505, Egln1, Tsnax, Disc1
Downstream gene4933403G14Rik, 2310079N02Rik, E330039K12Rik, BC021891, Kcnk1, Slc35f3, LOC668434
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279K14.T7 (MSMg01no279_k14.b1)MSMg01-279K14.TJ (MSMg01no279_k14.g1)
ACCAG416965AG416966
length731743
length of high quality
(start - end)		311 (45 - 355)283 (77 - 359)
definitionCHROMAT_FILE: MSMg01no279_k14.b1 PHD_FILE: MSMg01no279_k14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:19 2005CHROMAT_FILE: MSMg01no279_k14.g1 PHD_FILE: MSMg01no279_k14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,789,442 - 127,789,748)(127,943,541 - 127,943,823)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTATGTATCTGAAGATGACCTTGAACTTCTGACCCTCTGGCTTCT
CTCAGGTGTGCACCCCCACTCTCAGGCTTCACGTGGGGCTGGGGGTGCAC
CCTAGGGCATCACGCAGGCTCAGCAAGAAGTCTGTCCACCCACAGAGCTG
TGCTCTATCCCTGGCAGCATGGTTTTCATTCTTTTTGGTGCGTGTATCTT
CAGGTTGCTGTGGGAGTGCTGCTGCTGTTGTTGTTTGTATTGTACTCAAC
ATCATCAACTTGATCTGGGATCTTAGGTGATCTCATGTAGCTGACGTCGA
AATTTCTTTTTTTGCTGCCGCCCGACTCAGTGCAGCAATGAGAGCCTCAT
GGGGCGAGGGGGGTTTCCCACGGCTTTGAACTGAGACCTGCCCCTGCATC
CAATGGGATTGCTGATTCAGGTCCCTGTGGTTCCCCACAATGCATTTCAA
CACCAGCCCTCTGTATGGTGTTTTCCCTTCACCTCCACCCAACCTCAATG
ACCGCCTTTCCTAATTTAAAAAAAAAATTCTACATTTGAAAATATGACTT
TTTCTCTTCTCATTATTTGCCCATCTTCTGTAAAGGAAGAGGACAGACTG
TGTACTCCTGTATACAGGCCTTAGGCGTGTGGTTGGATTCCCAATTGGTT
GGTACACCCACACGCCCTCCTTACACTAAAT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTAGAGACAGGACACATGGACAGA
GTAAAGAGTTAGGGGATGAACTGGAGGCTGTTGAAGGATGGAAGTAGACA
CCCTGAGGAGGTGAGGCGCGCCCAGTAGTTCAGCTGCTCGCCCGCTGAGG
GGCACAGCAGGAACAGTGGCTGCTATGACTGTCCTGCCCCTCAGCTCTCC
AGAGCTGAAGCTTGTCATGTAGTTCTCATGGTAGAAGCCCCTAAAGCAGT
TAATTGGAAAGTCCTAGTGTGTAGTCTTGAGAGGCAAACTTTGAAGGCCA
GTGTGGGGCTCCTCCAGCACCACAACGATGGCGTGAGGTCGAGCGATTAT
CCCAGAATTAGCATCGCAGCTGCCACACTGGTGCCAGTCTCAGGCAGAGA
AGAAGGCAACTGGAGACGCCCTGCAAATCAGGAGGGTTCTGCCAACCTAG
TTGCCTCTCTCCAGGTGGCATGGGGCGGTAAAGCTTCTGATTGATAGACT
TCCTACACAGCGGCTCCGCTCCTCCTTAGGAACGGAGGGAGCCAGGAGGC
TAGAGTGACTCCAGGGTCTGTGAGCAGCAAAACCCAGTGGCCCTCTTGTA
CCTCAGGGCGGGAGGTGGCCAGCTGCCCTCTATCACCATCTGTCTCCTAT
CCACTCGGATAAGCCGGATCAGGCGGTGCTGCTAGCTGATTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_k14.b1 MSMg01no279_k14.b1 CHROMAT_FILE:
MSMg01no279_k14.b1 PHD_FILE: MSMg01no279_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:19 2005
         (311 letters)



>mm_chr8_127789238_127789948
          Length = 711

 Score =  547 bits (283), Expect = e-160
 Identities = 301/307 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattatgtatctgaagatgaccttgaacttctgaccctctggcttctctcaggtg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattatgtatctgaagatgaccttgaacttctgaccctctggcttctctcaggtg 264

                                                                       
Query: 65  tgcacccccactctcaggcttcacgtggggctgggggtgcaccctagggcatcacgcagg 124
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgcaccaccactctcaggcttcacgtggggctgggggtgcaccctagggcatcacgcagg 324

                                                                       
Query: 125 ctcagcaagaagtctgtccacccacagagctgtgctctatccctggcagcatggttttca 184
           ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 325 ctcagcaagaagtctgtccacccacggagctgtgctgtatccctggcagcatggttttca 384

                                                                       
Query: 185 ttctttttggtgcgtgtatcttcaggttgctgtgggagtgctgctgctgttgttgtttgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 385 ttctttttggtgcgtgtatcttcaggttgctgtgggagtgctgctgccgttgttgtttgt 444

                                                                       
Query: 245 attgtactcaacatcatcaacttgatctgggatcttaggtgatctcatgtagctgacgtc 304
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 445 attgtactcaacatcatcaacttgctctgggatcttaggtgatctcatgtagctgacatc 504

                  
Query: 305 gaaattt 311
           |||||||
Sbjct: 505 gaaattt 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no279_k14.g1 MSMg01no279_k14.g1 CHROMAT_FILE:
MSMg01no279_k14.g1 PHD_FILE: MSMg01no279_k14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:19 2005
         (283 letters)



>mm_chr8_127943341_127944023
          Length = 683

 Score =  501 bits (259), Expect = e-146
 Identities = 277/283 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttagagacaggacacatggacagagtaaagagttaggggatgaactggaggctgttgaag 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 483 ttagagacaggacacatggacagggtaaagagttaggggatgaactggaggctgttgaag 424

                                                                       
Query: 61  gatggaagtagacaccctgaggaggtgaggcgcgcccagtagttcagctgctcgcccgct 120
           |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 423 gatggaagtagacaccctgaggaggtgaggtgcgtccagtagttcagctgctcgcccgct 364

                                                                       
Query: 121 gaggggcacagcaggaacagtggctgctatgactgtcctgcccctcagctctccagagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gaggggcacagcaggaacagtggctgctatgactgtcctgcccctcagctctccagagct 304

                                                                       
Query: 181 gaagcttgtcatgtagttctcatggtagaagcccctaaagcagttaattggaaagtccta 240
           |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct: 303 gaagcttgtcatgtagttctcatggtagaagcgcctaaagcagttaattggaaagtccca 244

                                                      
Query: 241 gtgtgtagtcttgagaggcaaactttgaaggccagtgtggggc 283
           |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 243 gtgtgtggtcttgagaggcaaactttgaaggccagtgtggggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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