Query= MSMg01no279_m11.b1 MSMg01no279_m11.b1 CHROMAT_FILE:
MSMg01no279_m11.b1 PHD_FILE: MSMg01no279_m11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:28 2005
(694 letters)
>mm_chr8_129872753_129873846
Length = 1094
Score = 1029 bits (532), Expect = 0.0
Identities = 549/555 (98%), Gaps = 1/555 (0%)
Strand = Plus / Minus
Query: 141 aaaaaaaaagcatcagcagaagaaattatttaattttcatttaattttggtaggccatat 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1094 aaaaaaaaagcatcagcagaagaaattatttaattttcatttaattttggtaggccatat 1035
Query: 201 gcacctaaaaaatctattattcatttctcttaagtttttcaatttagtgaaatatatttt 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1034 gcacctaaaaaatctattattcatttctcttaagtttttcaatttagtgaaatatatttt 975
Query: 261 taaggtttaccactataagcttctaaatttcatcagtatctaccataatggcttcctttt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 974 taaggtttaccactataagcttctaaatttcatcagtatctaccataatggcttcctttt 915
Query: 321 tcacctctaattttattat-ggggggcgggatggctaaaggtttttcaatctatgaaaca 379
||| ||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||
Sbjct: 914 tcatctctaattttattatggggggggggggtggctaaaggtttttcaatctatgaaaca 855
Query: 380 aaatctaccaacaacaacaaaaaaagcctaattcaaacactctccatagacaggactaag 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 aaatctaccaacaacaacaaaaaaagcctaattcaaacactctccatagacaggactaag 795
Query: 440 tcataggatcctgtgaaacaaaaacttctacaggaactgagttaacagtggccaatggtt 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 tcataggatcctgtgaaacaaaaacttctacaggaactgagttaacagtggccaatggtt 735
Query: 500 acctttcgatagctgaccagaataacaccacctagctttgtaatgagcaccaacaagaag 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 acctttcgatagctgaccagaataacaccacctagctttgtaatgagcaccaacaagaag 675
Query: 560 tactataattcaggggcagatggacactatgcattttgagacatgaacaaatctgtcttc 619
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 tactataattcagggacagatggacactatgcattttgagacatgaacaaatctgtcttc 615
Query: 620 tatcaatatcatctcattactcanaatcattggggtaatgctttaaagggtttggctgct 679
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 614 tatcaatatcatctcattactcaaaatcattggggtaatgctttaaagggtttggctgct 555
Query: 680 aggcatggtggcatg 694
|||||||||||||||
Sbjct: 554 aggcatggtggcatg 540
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1094
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1084
Effective search space: 741456
Effective search space used: 741456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no279_m11.g1 MSMg01no279_m11.g1 CHROMAT_FILE:
MSMg01no279_m11.g1 PHD_FILE: MSMg01no279_m11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:28 2005
(659 letters)
>mm_chr8_129753753_129754810
Length = 1058
Score = 1193 bits (617), Expect = 0.0
Identities = 647/657 (98%), Gaps = 1/657 (0%)
Strand = Plus / Plus
Query: 1 cacagcaagtaattacatatatttggaaggtgccctataccacagccatttccagcatcc 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 cacagcaagtaattacatatatttggaaggtgccctataccacagcgatttccagcatcc 260
Query: 61 tcacacaaatcatccgctaaaccctctgtacaggtgtgttaatgggcacactaacttaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcacacaaatcatccgctaaaccctctgtacaggtgtgttaatgggcacactaacttaga 320
Query: 121 tggacagccacaaaatctacttatgttggactgactctatgacctgcgtactaatgttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggacagccacaaaatctacttatgttggactgactctatgacctgcgtactaatgttta 380
Query: 181 accaaagtttattttcagctgaaggccattcccagtttccccataagatctgtggcgaac 240
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 381 accaaagtttattttcagctgaaggccattcgcagtttccccaaaagatctgtggcgaac 440
Query: 241 cactccttcttgcttcatcattagtattccgagctccgtcatctgtagttcaaactcttt 300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 cactccttcttgcttcatcattagtattccgagctccgtcatctgcagttcaaactcttt 500
Query: 301 cccttgctttcgttgggggagccgatggaacaggttgcttagaaacccctggccacacgc 360
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 501 cccttgctttcgttgggggagacaatggaacaggttgcttagaaacccctggccacacgc 560
Query: 361 tcgcagggaattatcaacctcttctgcacatttccctccacatgcacagagaaaattggc 420
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgcagggaattatcaacctcttctgcacatttccctccacatgcacagagaaaattggc 620
Query: 421 tttggctgctgacaacagttaattgattgcaggttgtttaagtggaaaggcaaggttgaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttggctgctgacaacagttaattgattgcaggttgtttaagtggaaaggcaaggttgaa 680
Query: 481 agtatatttcctttcatatttatgcattcgatgtagagaagctatacggagacactttcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agtatatttcctttcatatttatgcattcgatgtagagaagctatacggagacactttcc 740
Query: 541 acagggactgaacgtctcatggcagcatccaggtctgaggttgtgctttggtatgcagat 600
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 741 acagggactgaacgtctcatggcagcagccaggtctgaagttgtgctttggtatgcagat 800
Query: 601 cttgacgccggtcagctcccgggactatctctgcttttccagacccccccctttttt 657
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 801 cttgacgccggtcagctcccgggactatctctgcttttccagaccccccc-tttttt 856
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1058
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1048
Effective search space: 680152
Effective search space used: 680152
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
