BAC Information

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BAC

Clone NameMSMg01-280G11
Chromosome8 (Build37)
Map Location 38,794,371 - 38,953,850
singlet/doubletdoublet
Overlap geneSgcz
Upstream geneA730069N07Rik, AI429214, LOC666877, LOC100041616, 1700016D18Rik, LOC641121, LOC621149
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280G11.T7 (MSMg01no280_g11.b1)MSMg01-280G11.TJ (MSMg01no280_g11.g1)
ACCAG417506AG417507
length727730
length of high quality
(start - end)		682 (46 - 727)654 (77 - 730)
definitionCHROMAT_FILE: MSMg01no280_g11.b1 PHD_FILE: MSMg01no280_g11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:14 2005CHROMAT_FILE: MSMg01no280_g11.g1 PHD_FILE: MSMg01no280_g11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,794,371 - 38,795,048)(38,953,356 - 38,953,850)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTGACCAATACCGAATGGCAGAGAAGCACCTGAAAAAATGT
TCAACATCCTTAATCATCAGGGAAATGTAAATCAAAACAACCCTGAGATT
CCACCTTACACCAGTCAGAATGGCTAAGGTCAAAAATTCAGGTGACAGCA
GATGCTGGCGAGGATGTGGAGAAATAGGAACACTCCTCCATTGTCGGTGG
GATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTTAG
AAAATTGGACATAGTAATACCGGAGGATCCAGCAATACCTTTTCTAGGCA
TATATCCAGAAGATGCCCCAACCGGTAAGGAGAACACATGTTCTACTATG
TTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATG
CCCCTCAACAGAGGAATGGATACATTTTTAATCTTTTTGCCATTCTGGTT
TATATGTTACTTAGAGCCTTGGTATAGTGAAAATGTGAAAAAAACTCTAA
CAGTGAGACAGTAATATAGGCATGGCCAGTTTGTTGATAAGGTTTGTTCA
AAAAAATAATGTGTGTCCATTCATCAAATATACATATAAAATTATAGGTT
ATTTATTGTTAACACTTTCAAAGAGAATTGAGAGAAACAGCAACCTATAA
GAAAATGAATTACAGATATTTGATCTT

CCATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAATATATTGCATCTAAAAGAAAG
TCCTAATTTTAAATAAAACCACTACCGGCCAATATTCTTTCTTTAGAAAT
TTACTGTAAAAATAACAATGGATCAGTGTAAATAATTACTTAATATAAGT
TATCACTTTACCATCAAATAAAATGTGTACTACGAGAGTTATACACTATA
ATACATTCTGATTAAACATAATTTATTTTGAGATGCATGAATTTTTAAAA
ACATAAAAATCATCCAGTCAAACAACATATTAATTGAAAAAAGAAAAAAA
TATGATCATCTTAATTTACATAGTTACTTTTTTTTATATATATTATGATT
TTGTATTTATACATTTACAAATATCCCCAAAATAAAACTGATAGAATCAA
ACAATACAGATGACCTGCAAAGTAGCAGATAAAATAAACACACTGTCAGT
TTTAGCTATATTCTGAATTGAGCAATCTAAATAAGAAATTAGAAATTAAA
TGTCATGTATCATAGCCTTGAAATAAATAAAATAATCTAAAATTTACCCA
GGAGAAAGACATGCTAAATAAAAAATAAAAAACATTCCTGACAGAAATTA
AAGGAAATATTAAATAGAAAAATATTCAATGTTCATGAATTGGAGAACAC
AATTAAAATACCACTACTGTGCAAAATAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_g11.b1 MSMg01no280_g11.b1 CHROMAT_FILE:
MSMg01no280_g11.b1 PHD_FILE: MSMg01no280_g11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:14 2005
         (682 letters)



>mm_chr8_38794167_38795248
          Length = 1082

 Score = 1295 bits (670), Expect = 0.0
 Identities = 676/678 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcacctgaccaataccgaatggcagagaagcacctgaaaaaatgttcaacatcc 64
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatgttcaacatcc 264

                                                                       
Query: 65  ttaatcatcagggaaatgtaaatcaaaacaaccctgagattccaccttacaccagtcaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttaatcatcagggaaatgtaaatcaaaacaaccctgagattccaccttacaccagtcaga 324

                                                                       
Query: 125 atggctaaggtcaaaaattcaggtgacagcagatgctggcgaggatgtggagaaatagga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atggctaaggtcaaaaattcaggtgacagcagatgctggcgaggatgtggagaaatagga 384

                                                                       
Query: 185 acactcctccattgtcggtgggattgcaagcttgtacaaccactctggaaatcagtctgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acactcctccattgtcggtgggattgcaagcttgtacaaccactctggaaatcagtctgg 444

                                                                       
Query: 245 cggttccttagaaaattggacatagtaataccggaggatccagcaataccttttctaggc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cggttccttagaaaattggacatagtaataccggaggatccagcaataccttttctaggc 504

                                                                       
Query: 305 atatatccagaagatgccccaaccggtaaggagaacacatgttctactatgttcatagca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atatatccagaagatgccccaaccggtaaggagaacacatgttctactatgttcatagca 564

                                                                       
Query: 365 gccttatttataatagccagaagctggaaagaacccagatgcccctcaacagaggaatgg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gccttatttataatagccagaagctggaaagaacccagatgcccctcaacagaggaatgg 624

                                                                       
Query: 425 atacatttttaatctttttgccattctggtttatatgttacttagagccttggtatagtg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atacatttttaatctttttgccattctggtttatatgttacttagagccttggtatagtg 684

                                                                       
Query: 485 aaaatgtgaaaaaaactctaacagtgagacagtaatataggcatggccagtttgttgata 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaaatgtgaaaaaaactctaacagtgagacagtaatataggcatggccagtttgttgata 744

                                                                       
Query: 545 aggtttgttcaaaaaaataatgtgtgtccattcatcaaatatacatataaaattataggt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aggtttgttcaaaaaaataatgtgtgtccattcatcaaatatacatataaaattataggt 804

                                                                       
Query: 605 tatttattgttaacactttcaaagagaattgagagaaacagcaacctataagaaaatgaa 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tatttattgttaacactttcaaagagaattgagagaaacagcaacctataagaaaatgaa 864

                             
Query: 665 ttacagatatttgatctt 682
           ||||||||||||||||||
Sbjct: 865 ttacagatatttgatctt 882


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space:   720384
Effective search space used:   720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no280_g11.g1 MSMg01no280_g11.g1 CHROMAT_FILE:
MSMg01no280_g11.g1 PHD_FILE: MSMg01no280_g11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:14 2005
         (654 letters)



>mm_chr8_38953356_38954409
          Length = 1054

 Score =  942 bits (487), Expect = 0.0
 Identities = 493/495 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatatattgcatctaaaagaaagtcctaattttaaataaaaccactaccggccaatatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 495 aaatatattgcatctaaaagaaagtcctaattttaaataaaaccactacgggccaatatt 436

                                                                       
Query: 61  ctttctttagaaatttactgtaaaaataacaatggatcagtgtaaataattacttaatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ctttctttagaaatttactgtaaaaataacaatggatcagtgtaaataattacttaatat 376

                                                                       
Query: 121 aagttatcactttaccatcaaataaaatgtgtactacgagagttatacactataatacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aagttatcactttaccatcaaataaaatgtgtactacgagagttatacactataatacat 316

                                                                       
Query: 181 tctgattaaacataatttattttgagatgcatgaatttttaaaaacataaaaatcatcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tctgattaaacataatttattttgagatgcatgaatttttaaaaacataaaaatcatcca 256

                                                                       
Query: 241 gtcaaacaacatattaattgaaaaaagaaaaaaatatgatcatcttaatttacatagtta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 gtcaaacaacatattaattgaaaaaagaaaaaaatatgatcatcttaatttacatagtta 196

                                                                       
Query: 301 cttttttttatatatattatgattttgtatttatacatttacaaatatccccaaaataaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 cttttttttatatatattatgattttgtatttatacatttacaaatatccccaaaataaa 136

                                                                       
Query: 361 actgatagaatcaaacaatacagatgacctgcaaagtagcagataaaataaacacactgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 actgatagaatcaaacaatacagatgacctgcaaagtagcagataaaataaacacactgt 76

                                                                       
Query: 421 cagttttagctatattctgaattgagcaatctaaataagaaattagaaattaaatgtcat 480
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75  cagttttagctatattcagaattgagcaatctaaataagaaattagaaattaaatgtcat 16

                          
Query: 481 gtatcatagccttga 495
           |||||||||||||||
Sbjct: 15  gtatcatagccttga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space:   672336
Effective search space used:   672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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