BAC Information

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BAC

Clone NameMSMg01-290G08
Chromosome8 (Build37)
Map Location 116,808,346 - 116,975,851
singlet/doubletdoublet
Overlap geneAI427515, Clec3a, Wwox
Upstream geneMon1b, 4930481F22Rik, Adamts18, Nudt7
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290G08.T7 (MSMg01no290_g08.b1)MSMg01-290G08.TJ (MSMg01no290_g08.g1)
ACCAG419684AG419685
length751707
length of high quality
(start - end)
313 (36 - 348)286 (60 - 345)
definitionCHROMAT_FILE: MSMg01no290_g08.b1 PHD_FILE: MSMg01no290_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:56 2005CHROMAT_FILE: MSMg01no290_g08.g1 PHD_FILE: MSMg01no290_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,975,542 - 116,975,851)(116,808,346 - 116,808,630)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGGA
CCCCAAACACAAGGACGCGGGCTTTACTCAAAAAAGGGGGTTACGGGGTT
AAGTTCAGGCAGCCCCCAGCCTGGCTCAGGATCCTCTACAGCTCCTTAGG
AAAGGTCAGGGCTGCTACACGGTCTGGAAGGAAAGCAGCCCAGAAAGGAA
AGGGTTTACTCTAGGTAGGAACCCATCACAGTGACAATGGACAAGTGAAA
GTGTGGCACTAACTCCATGCTGGAGCATCACCACAGGGTCTAGGGACAGA
CCCTCTAAGCCTACACATGAAGACACTGTACGGAAAGGATCCCGCAGGTT
TTCCTGNTTCGCCACCCCCCGCCTCTACTCTGCTTTAAAGAGAACCAAGT
GAGGGATGACTGACACAATCCAAGTGGACCTCTTTCATCTCTGGGAGTGT
GAACCTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTCCTTCCACCCCTACTCACCTTTTATCTCCTTACTATATCCATTTT
TCCTTTACTCCCTTTCCTTCTCTATTCTTCACTTTTCTTTCCCCCTTACA
CACCGCATTTTCCTTATTCCTTGGCATATTCTCTCTCCCATATTTTTATC
CTTGACTTTCCTTCCTCCCCCCCTTTACTCTTCCTTCCTTTTACTCTCTC
CCATTACCTATTCTCTACCCTCCGTTCCCTTTTTCCTTGATCTAGCCTCC
N
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCATCTAAAGGCATTGGTAGATGGGTGGTGGCAGCACATGAC
TTTAACCCCAGCACTTGGGAGGCAGAAGCAGGCAGATCTCTGAGTTCAAG
GCCAGCCTCATCTATAGATGGAGTTCCAGGACAATCAGGGCTACACAGAG
AAACCCTGTCTAAAAAATTAAGACATTGGTCAGTTGCTGATCTGTCATCT
GCATCATGCATTTCCAATAAGTCCCTATTCATTCCCTGCTAACTGCATGA
AAGCAGGCAGGACCGGGACTTGAGAAGTGGTATCCATAAAACCTTTTTTA
GCTCCCTCCCCCTTCTCTGTAGCGATTGATTCAACCATCTGTCAAAAGTG
AACTTAGAGTTACTGCACTGTGAGCGCCCGACTCGCCAGCAAGAACGACG
CTACAATAGGATCCTTCTGCACACGTTCATTGGGAGAGCATTGACTGCAT
AGGCGAAAGACCCTGAGCCCAGAAATGGTGCTGCTTATATAGGCCTAGGA
GTGACGTGTCCATACCTGATTGGTTATGCTACCAGTACCTCATTAGTATG
CGTCGGGCCATGCAGTGACTCGGCAAAAAAAAACTCTTATGCACATGCGC
ACATTGGTAATCCATAATCCATAATCATGGGCGGTGGCCAGTGGAAGCCA
GCGCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_g08.b1 MSMg01no290_g08.b1 CHROMAT_FILE:
MSMg01no290_g08.b1 PHD_FILE: MSMg01no290_g08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:56 2005
         (313 letters)



>mm_chr8_116975339_116976051
          Length = 713

 Score =  584 bits (302), Expect = e-171
 Identities = 308/310 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccaggaccccaaacacaaggacgcgggctttactcaaaaaagggggttacgggg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ggaattccaggaccccaaacacaaggacgcgggctttactcaaaaaagggggttacgggg 454

                                                                       
Query: 64  ttaagttcaggcagcccccagcctggctcaggatcctctacagctccttaggaaaggtca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ttaagttcaggcagcccccagcctggctcaggatcctctacagctccttaggaaaggtca 394

                                                                       
Query: 124 gggctgctacacggtctggaaggaaagcagcccagaaaggaaagggtttactctaggtag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 393 gggctgctacacggtctggaaggaaagcagcccagaaaggaaagggtttactctaggcag 334

                                                                       
Query: 184 gaacccatcacagtgacaatggacaagtgaaagtgtggcactaactccatgctggagcat 243
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gaacccatcacagtaacaatggacaagtgaaagtgtggcactaactccatgctggagcat 274

                                                                       
Query: 244 caccacagggtctagggacagaccctctaagcctacacatgaagacactgtacggaaagg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 caccacagggtctagggacagaccctctaagcctacacatgaagacactgtacggaaagg 214

                     
Query: 304 atcccgcagg 313
           ||||||||||
Sbjct: 213 atcccgcagg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no290_g08.g1 MSMg01no290_g08.g1 CHROMAT_FILE:
MSMg01no290_g08.g1 PHD_FILE: MSMg01no290_g08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:56 2005
         (286 letters)



>mm_chr8_116808146_116808831
          Length = 686

 Score =  536 bits (277), Expect = e-157
 Identities = 283/285 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catctaaaggcattggtagatgggtggtggcagcacatgactttaaccccagcacttggg 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 catctaaaggcattggtagatgggtggtggcagcacatgactttaatcccagcacttggg 260

                                                                       
Query: 61  aggcagaagcaggcagatctctgagttcaaggccagcctcatctatagatggagttccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggcagaagcaggcagatctctgagttcaaggccagcctcatctatagatggagttccag 320

                                                                       
Query: 121 gacaatcagggctacacagagaaaccctgtctaaaaaattaagacattggtcagttgctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacaatcagggctacacagagaaaccctgtctaaaaaattaagacattggtcagttgctg 380

                                                                       
Query: 181 atctgtcatctgcatcatgcatttccaataagtccctattcattccctgctaactgcatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atctgtcatctgcatcatgcatttccaataagtccctattcattccctgctaactgcatg 440

                                                        
Query: 241 aaagcaggcaggaccgggacttgagaagtggtatccataaaacct 285
           |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 aaagcaggcaggaccgggacttgagaagtggtgtccataaaacct 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)