Query= MSMg01no291_b05.b1 MSMg01no291_b05.b1 CHROMAT_FILE:
MSMg01no291_b05.b1 PHD_FILE: MSMg01no291_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:46 2005
(427 letters)
>mm_chr8_113681949_113682775
Length = 827
Score = 781 bits (404), Expect = 0.0
Identities = 419/424 (98%)
Strand = Plus / Plus
Query: 4 ggaattcactatgtatctcacgctggtgtttaactcagaggtctacctgcttctgactcc 63
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactatgtagctcaggctggtgtttaactcagaggtctacctgcttctgactcc 263
Query: 64 cgagtgctgggattaatgacacacagcataagacctggccttttcttttcttttttaatt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cgagtgctgggattaatgacacacagcataagacctggccttttcttttcttttttaatt 323
Query: 124 attactgctattcttgttctgtgcatgtgcttgtatgtgtaagatgtgagtatgttagtg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 attactgctattcttgttctgtgcatgtgcttgtatgtgtaagatgtgagtatgttagtg 383
Query: 184 cacacaagctgtgacaacctgcggaggacagaggaccacgccggggggtcagtttactcc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cacacaagctgtgacaacctgcggaggacagaggaccacgccggggggtcagtttactcc 443
Query: 244 tgcttctgactaggttccagggatcggcctctggtcttcaggtgtttacccactcagccc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgcttctgactaggttccagggatcggcctctggtcttcaggtgtttacccactcagccc 503
Query: 304 tcatgtacatcctaattcatatcttttagttcatggggagagagaaggaaaatcaacaca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tcatgtacatcctaattcatatcttttagttcatggggagagagaaggaaaatcaacaca 563
Query: 364 gctgtaacaccccgcatcataaactgcaggtttccctgtacaaactgagatggaggaaga 423
|||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gctgtaacactctggatcataaactgcaggtttccctgtacaaactgagatggaggaaga 623
Query: 424 cacc 427
||||
Sbjct: 624 cacc 627
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 827
Length adjustment: 9
Effective length of query: 418
Effective length of database: 818
Effective search space: 341924
Effective search space used: 341924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no291_b05.g1 MSMg01no291_b05.g1 CHROMAT_FILE:
MSMg01no291_b05.g1 PHD_FILE: MSMg01no291_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:46 2005
(288 letters)
>mm_chr8_113850117_113850804
Length = 688
Score = 480 bits (248), Expect = e-140
Identities = 272/286 (95%), Gaps = 11/286 (3%)
Strand = Plus / Minus
Query: 1 caggtacaagaatttctttgggctgtaattccaccattggaaatattgaatcacaggttc 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 622 caggtacaagaatttctttgggctgtaattccaccattggaaatgttgaatcacaggttc 563
Query: 61 cacatatattaaattggctaagtactaccaggaagctcttagagtggagcaggtgtagcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 562 cacatatattaaattggctaagtactaccaggaagctcttagagtggagcaggtgtaacc 503
Query: 121 acagtatatagtatttagagcctgacacccctgcagtgcctaagaactataccccctgca 180
|||||||||||||| || |||||||| ||||||||||||||||||||||||
Sbjct: 502 acagtatatagtat----------ac-cccctgcaatgcctaagaactataccccctgca 454
Query: 181 gtgcctgagaacacttatatttcatatactcactgatccttggtgtttctaaatttgttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 gtgcctgagaacacttatatttcatatactcactgatccttggtgtttctaaatttgttt 394
Query: 241 tatccttataaagtgctatcagatctgaaggcatttcatttactaa 286
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tatccttataaagtgctatcagatctgaaggcatttcatttactaa 348
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
