Query= MSMg01no294_k17.b1 MSMg01no294_k17.b1 CHROMAT_FILE:
MSMg01no294_k17.b1 PHD_FILE: MSMg01no294_k17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:24 2005
(321 letters)
>mm_chr8_115323440_115324160
Length = 721
Score = 580 bits (300), Expect = e-170
Identities = 312/316 (98%)
Strand = Plus / Plus
Query: 4 ggaattcctaataacttgcaaggaaacaatgttattctttctaagagaggcagagaaact 63
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctaataacttgtaaggaaacaatgttattctttctaagagaggcagagaaact 263
Query: 64 gacaacagctactagtgccaccataaagcaaaacaacacacagaaccactgtgaggttga 123
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gacaacagctacaagtgcaaccataaagcaaaacaacacacagaaccactgtgaggttga 323
Query: 124 aaaacctccaaatgtagatttgtcttgcaagttacagagagtaaatctctctagagagat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaaacctccaaatgtagatttgtcttgcaagttacagagagtaaatctctctagagagat 383
Query: 184 ttaaaggtttggctgccacccaccctctggggtaattaaaatctaaggatttgtgacctc 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtaaaggtttggctgccacccaccctctggggtaattaaaatctaaggatttgtgacctc 443
Query: 244 cctgatacagatttgttacattccagagccacagttcttctcactttagggagggggagg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cctgatacagatttgttacattccagagccacagttcttctcactttagggagggggagg 503
Query: 304 gggagagtcatcctgt 319
||||||||||||||||
Sbjct: 504 gggagagtcatcctgt 519
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space: 222144
Effective search space used: 222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no294_k17.g1 MSMg01no294_k17.g1 CHROMAT_FILE:
MSMg01no294_k17.g1 PHD_FILE: MSMg01no294_k17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:24 2005
(675 letters)
>mm_chr8_115366898_115367969
Length = 1072
Score = 1265 bits (654), Expect = 0.0
Identities = 669/675 (99%), Gaps = 3/675 (0%)
Strand = Plus / Minus
Query: 1 aagagatatctatgtccatttcctgacggagcttctagtatggcattaagagaaaagtta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 aagagatatctatgtccatttcctgacggagcttctagtatggcattaagagaaaagtta 813
Query: 61 tatatttcttccaagtctactttatggtttctctactcttaaataagtcaactgagtggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 tatatttcttccaagtctactttatggtttctctactcttaaataagtcaactgagtggc 753
Query: 121 cacaagtctgtgagtagaatatctatcagggtgctttcgttgtggaagctattcattaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 cacaagtctgtgagtagaatatctatcagggtgctttcgttgtggaagctattcattaaa 693
Query: 181 tttgttttcagggaaagaataaataatgaaaataatgaggacataaatttattagagacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 tttgttttcagggaaagaataaataatgaaaataatgaggacataaatttattagagacc 633
Query: 241 taaatatgtctttgtcaaatatgtcactagcaagctcatttctttcagtgaaaagatgct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 taaatatgtctttgtcaaatatgtcactagcaagctcatttctttcagtgaaaagatgct 573
Query: 301 aataagattgttaggcagctaaaggtgtaagtgggggggggaatagccgatgaattttgt 360
||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 572 aataagattgttaggcagctaaaggtgtaag--gggggggga-tagccgatgaattttgt 516
Query: 361 tctaaatatagccattagaaatgtctgggttataatttctgataatttatcatttatcct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tctaaatatagccattagaaatgtctgggttataatttctgataatttatcatttatcct 456
Query: 421 gcctcatcatgtctctgagtctttgtttacattaaaatgtatgagcagggatcagataaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 gcctcatcatgtctctgagtctttgtttacattaaaatgtatgagcagggatcagataaa 396
Query: 481 cgataatccttgaacttcatggtctgtaacatctgcaaaagtaattagcaaagatgcaaa 540
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 395 cgataatccttgaacttcatggtctgtaacatctgcaaaagtaattaacaaagatgcaaa 336
Query: 541 agaaaatggaacccatggagagggattccagcctggtgcccagcaaacactgagtcaatg 600
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 335 agaaaatggaacccatggagagggattccagcctggtgtccagcaaacactgagtcaatg 276
Query: 601 gacattgtaaagtaaattatcagaagagcacagataatanaatggacaaggtagaagaga 660
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 275 gacattgtaaagtaaattatcagaagagcacagataataaaatggacaaggtagaagaga 216
Query: 661 agctgttgaaactga 675
|||||||||||||||
Sbjct: 215 agctgttgaaactga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1072
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1062
Effective search space: 706230
Effective search space used: 706230
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
