Query= MSMg01no295_b23.b1 MSMg01no295_b23.b1 CHROMAT_FILE:
MSMg01no295_b23.b1 PHD_FILE: MSMg01no295_b23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:57 2005
(705 letters)
>mm_chr8_46395178_46396282
Length = 1105
Score = 1257 bits (650), Expect = 0.0
Identities = 689/702 (98%)
Strand = Plus / Plus
Query: 4 ggaattcattaggccttgtcaaggagacagatacaggcaggagtcctacactaccacctc 63
|||||||| ||||||||||||||||| |||||||||||||||| ||||||| ||||||||
Sbjct: 204 ggaattcactaggccttgtcaaggagccagatacaggcaggagccctacaccaccacctc 263
Query: 64 tctgtttaccacaatggcatccctagggatcaagaatgaccattgcttctgtggactcag 123
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 264 tctgtttaccacaatggcatccctaggggtcaagaatgaccattgcttctgtggactcag 323
Query: 124 agtccccaacagagctaacaaaggggcccaacgtaccaaacacttcatccagctcctgat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agtccccaacagagctaacaaaggggcccaacgtaccaaacacttcatccagctcctgat 383
Query: 184 ccactttcctctggacttctggattcgtgcccagtaggtataaggaccagttgattgcgg 243
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 384 ccactttcctctggacttctggattcgtgcccaataggtataaggaccagttgattgcag 443
Query: 244 cagcagttgtatcgtgaccctgtaaatataaaaaggagacatttagaagtgtagtcctgt 303
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 444 cagcagttgtatcgtgaccctgtaaatataaaaaggaggcatttagaagtgcagtcctgt 503
Query: 304 tggagaatgtacgaggaagaaactgaacgcactctgcttctcacagcttcagtgtgactg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tggagaatgtacgaggaagaaactgaacgcactctgcttctcacagcttcagtgtgactg 563
Query: 364 acgcacctaaattattcagtgcagctgctcacctcagtgtgagagagatttaacagttcc 423
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 acacacctaaattattcagtgcagctgctcacctcagtgtgagagagatttaacagttcc 623
Query: 424 ttccctgggcagaagtggcatgcttctgtaatcctaacacttgggaggaggccgaggcag 483
|| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 624 tttgctgggcagaagtggcatgcttctgtaatcctaatacttgggaggaggccgaggcag 683
Query: 484 gaggattgctgtactggttagttattgtcaactttacacacccggaaagagactctattg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gaggattgctgtactggttagttattgtcaactttacacacccggaaagagactctattg 743
Query: 544 agatattgcctccatcagactggcctgaaacacatgtggggccttctacttgattaatga 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 agatattgcctccatcagactggcctgaaacacatgtggggccttctacttgattaatga 803
Query: 604 tcgatgagggagggccccagatctccagccctggtgtactagaccatccctagccaagct 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tcgatgagggagggccccagatctccagccctggtgtactagaccatccctagccaagct 863
Query: 664 gggaccaggctatacaggaaaggcagctgaacatcagtggac 705
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 gggaccaggctatacaggaaaggcagctgaacatcagtggac 905
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 705
Length of database: 1105
Length adjustment: 10
Effective length of query: 695
Effective length of database: 1095
Effective search space: 761025
Effective search space used: 761025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no295_b23.g1 MSMg01no295_b23.g1 CHROMAT_FILE:
MSMg01no295_b23.g1 PHD_FILE: MSMg01no295_b23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:57 2005
(643 letters)
>mm_chr8_46434692_46435734
Length = 1043
Score = 1000 bits (517), Expect = 0.0
Identities = 555/583 (95%), Gaps = 24/583 (4%)
Strand = Plus / Minus
Query: 1 attaagggagaaactacacagatgctcccgaacagttcatctcaagacaaacataggctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 attaagggagaaactacacagatgctcccgaacagttcatctcaagacaaacataggctg 500
Query: 61 cagcacagcgcagtaaaatggacggtcctcgagaacagcagctcaaaaggcagcgatggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cagcacagcgcagtaaaatggacggtcctcgagaacagcagctcaaaaggcagcgatggt 440
Query: 121 ggcactgtatctactgggtagcactaaacgtctgtgtttagaaataaaggaagggatacc 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 439 ggcactgtatctactgggtagcactaaacgtctgtgtttagaaataaaggaaggaatacc 380
Query: 181 tagaaataaagacagactttcagtaagctgattttacacatgaaaggacagaataaactc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tagaaataaagacagactttcagtaagctgattttacacatgaaaggacagaataaactc 320
Query: 241 agtccccagatagttgaagtaataacggagctcacagcagaaataaagtaatggagactc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 agtccccagatagttgaagtaataacggagctcacagcagaaataaagtaatggagactc 260
Query: 301 agagacaaagaataaaagagatcagcgaagagtcatttttgttccttgtctgttgggtgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 agagacaaagaataaaagagatcagcgaagagtcatttttgttccttgtctgttgggtgt 200
Query: 361 ttcccagttctgttgacatataattgacagattaaaatagtatattttaaaaaataacat 420
||||||||||||||||| ||||||||| ||||||||
Sbjct: 199 ttcccagttctgttgacttataattga------------------------aaataacaa 164
Query: 421 tggattcactaacaagagaatgttatatttattgattatatatggttacatacatgttta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 tggattcactaacaagagaatgttatatttattgattatatatggttacatacatgttta 104
Query: 481 taatgtatatgtttacaagattgatgataaatatgtaatagatagatagatgattgaaat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 taatgtatatgtttacaagattgatgataaatatgtaatagatagatagatgattgaaat 44
Query: 541 atagataggtgatagacagaaagattgatagataggtagataa 583
||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 43 atagataggtgatagacagaaagattgatagatagatagataa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space: 653889
Effective search space used: 653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
