BAC Information

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BAC

Clone NameMSMg01-295D14
Chromosome8 (Build37)
Map Location 15,472,918 - 15,475,620
singlet/doubletdoublet
Overlap genenone
Upstream geneDlgap2, C030037F17Rik, Cln8, Arhgef10, 2900016B01Rik, 5830468F06Rik, Kbtbd11, BB014433, Myom2, EG665599, EG234097
Downstream geneEG665619, LOC634008, Csmd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295D14.T7 (MSMg01no295_d14.b1)MSMg01-295D14.TJ (MSMg01no295_d14.g1)
ACCAG423179AG423180
length739739
length of high quality
(start - end)
318 (42 - 359)234 (130 - 363)
definitionCHROMAT_FILE: MSMg01no295_d14.b1 PHD_FILE: MSMg01no295_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:06 2005CHROMAT_FILE: MSMg01no295_d14.g1 PHD_FILE: MSMg01no295_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,475,309 - 15,475,620)(15,472,918 - 15,473,146)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCAAATAATGTGACCTCACACAAACTCACAAGACTCCAGGAATCTATCCT
AGTCCTTTTTTTTTTTCTCCCACCTGAGTTTTTCTTGAAGTTTAGAAGTT
CCACCTCTGGGCTGAGTTACTCTTTCCTCCTCCGTGTCTTCTCTGAGTTT
GCTCTGCCTTCCTCGCACTTCTCTGTTTAAATTCTCATGCTTCTCTCTGG
TGTGGTTCTATTTCTGTGCTGTATTTCCAGTTTCTTTGTTGAGAACACAT
TCGGTTCCTCCTCACTGAGCCTAAGTGCAAGGACTTTTCAAATCCATGTC
GGCAGTTCTTTTTCTGGTCTGCTCCCCCCGCATTTTGGTTCATTTCTTTT
TTATTGAAAATATACTCTTATTTTTAATAAATCTTCATATGGCGGGGCGG
TTGGGATTACACCTGAGAAATTGAACCGGGTGAGCTATGAGGATCCCCTT
TTCTGTCTTCTAAAATGCATGCTGCTTCTTTTACATCGGCTCAGCCTGGC
TGGCCTGCTCAGATCTGTCTGTGGCTGGCCTGGTCTGAAATTCTCCTAGG
TATGGTTTTATCTCAAGCCCTGATGTGAGGAAATTTTGGAATCTACAATG
TCGACCTACCCTCACATCTTTTATTTATATGTATTCTGCCCCTCCACTCT
TTCCATTTCCTCTTCCGTGGTGTTACCGGAGCTTTGTGG
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAACATTGATAGATATTAGTATAAGGA
CACATTTTGCTTGTGTGTGTGTCTGTGTGAATACACATTTGCACCAGGCA
TAATTTGATATATACATGATGCACTACACACATAGGTTGAATACTCTAAA
TTTCTAGTATTAGAGATAAGTTAAAAGCAACAGGCTAGAGTTGTCATCAT
AACTGTTCTTCAAAATATACTGGGAATATTAATGTAATGCTAATATTATC
CTAATCTACCCAATATTTGTGTTCACCCTAATATATCCTTGTAATTATAT
CCCTCCTATTTTCCCTANCATCTCCCCCCCCCCCCTAGTTAAGATGGAGG
AAGTATATTGTGTCCCTCCACAAAAAAGTATCAAAAAAGGGGGGGCCGTT
TGGGGATGCTACCATGCTCAATTCTTTGTGCAGCATCGCCATTTCACAGT
TCCCACATAAACAGACCATATCTTTTGAGTCCACCACAGTTTTGAAAAGC
TATGTTGATGATGATCAGCTCACAGCTTCTATAGCTCATCCTGAGGTTGT
ATGCATAGTGCGGCTCCTCGTACAAGAATACGTCTGCCGTACCGGTCTAT
GCCTGCATCTCCTACCGTAAGTCTCTGGTTTGCCCCTTTCTTACCTTGTA
TTCCCGCTTTTCTCCTTTCCTTAGGTTTTTTCCATTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_d14.b1 MSMg01no295_d14.b1 CHROMAT_FILE:
MSMg01no295_d14.b1 PHD_FILE: MSMg01no295_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:06 2005
         (318 letters)



>mm_chr8_15475104_15475821
          Length = 718

 Score =  596 bits (308), Expect = e-175
 Identities = 311/312 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   aattccaaataatgtgacctcacacaaactcacaagactccaggaatctatcctagtcct 65
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 517 aattccaaataatgtgacctcacacaaactcacaagactccaggaatctatcctagtctt 458

                                                                       
Query: 66  ttttttttttctcccacctgagtttttcttgaagtttagaagttccacctctgggctgag 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ttttttttttctcccacctgagtttttcttgaagtttagaagttccacctctgggctgag 398

                                                                       
Query: 126 ttactctttcctcctccgtgtcttctctgagtttgctctgccttcctcgcacttctctgt 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ttactctttcctcctccgtgtcttctctgagtttgctctgccttcctcgcacttctctgt 338

                                                                       
Query: 186 ttaaattctcatgcttctctctggtgtggttctatttctgtgctgtatttccagtttctt 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ttaaattctcatgcttctctctggtgtggttctatttctgtgctgtatttccagtttctt 278

                                                                       
Query: 246 tgttgagaacacattcggttcctcctcactgagcctaagtgcaaggacttttcaaatcca 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tgttgagaacacattcggttcctcctcactgagcctaagtgcaaggacttttcaaatcca 218

                       
Query: 306 tgtcggcagttc 317
           ||||||||||||
Sbjct: 217 tgtcggcagttc 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no295_d14.g1 MSMg01no295_d14.g1 CHROMAT_FILE:
MSMg01no295_d14.g1 PHD_FILE: MSMg01no295_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:06 2005
         (234 letters)



>mm_chr8_15472717_15473350
          Length = 634

 Score =  412 bits (213), Expect = e-120
 Identities = 225/229 (98%)
 Strand = Plus / Plus

                                                                       
Query: 2   atacacatttgcaccaggcataatttgatatatacatgatgcactacacacataggttga 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 atacacatttgcaccaggcataatttgatatatacatgatgcactacacacataggttga 261

                                                                       
Query: 62  atactctaaatttctagtattagagataagttaaaagcaacaggctagagttgtcatcat 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 atactctaaatttctagtattagagataagttaaaagcaacaggctagagttgtcatcat 321

                                                                       
Query: 122 aactgttcttcaaaatatactgggaatattaatgtaatgctaatattatcctaatctacc 181
           |||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||
Sbjct: 322 aactgttcttcaaaatatactgggaatattaaagtaatgctcatagtatcctaatctacc 381

                                                            
Query: 182 caatatttgtgttcaccctaatatatccttgtaattatatccctcctat 230
           |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 382 caatatttgtgttcaccctaatttatccttgtaattatatccctcctat 430


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)