BAC Information

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BAC

Clone NameMSMg01-295D24
Chromosome8 (Build37)
Map Location 90,684,155 - 90,684,470
singlet/doubletsinglet
Overlap geneHeatr3
Upstream geneCbln1, LOC100040294, 4933402J07Rik, Zfp423, LOC100040328, 5033428A16Rik
Downstream genePapd5, Adcy7, Brd7, LOC100040369, Nkd1, 9130017C17Rik, Nod2, Cyld, LOC675985, Sall1, LOC100041089, EG625801
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295D24.T7 (MSMg01no295_d24.b1)MSMg01-295D24.TJ (MSMg01no295_d24.g1)
ACCAG423197AG423198
length740743
length of high quality
(start - end)
322 (45 - 366)293 (75 - 367)
definitionCHROMAT_FILE: MSMg01no295_d24.b1 PHD_FILE: MSMg01no295_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:08 2005CHROMAT_FILE: MSMg01no295_d24.g1 PHD_FILE: MSMg01no295_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTTTGTTGTTTTGTTTTATTTTGTTTTTTCGAAACAGGGTTTCTC
TGTATCAGTCTGAGTACCACAGTGATCCCTGTCTTATCGTTGTTATTTTC
AAAGTCTCTCTGGGTATGGAATTTAGGCAGAATGGTGAAGGTGATCTGTC
TATTGCACAATATCTAGGCAGTGATTCTCCATTACCGGTAGTTGCTCCTC
TCCCAGGGGACACTTGGCAATGTCTGAAGGTATTCCTGTGAGTATGTCTT
GGTGGTTGCTCCTGGTGTGCAGCATGGATTCTAAGAGACATCCTGCACAG
GAGTGCTCTGTATGTTCATACTGTACCCCCCCCCCCGGCCAGGGTCACTG
GTGCTGAGGTAGAATCTACACCACTAAAAAAAACACAGAAAAACTTAGGG
GCCATGAGCCAGAATTGTTTACAGTGAACACTTGGTGCTAGAATCATCCC
ACAGGGTGCTCCTATGTGACCCGAACCTTCTCAAAACAATTGACTGGGTT
CCCAGTCTGAGGAAAACCCACACATCTATGAGTCATCTGCAAGTCACATT
GCTTGTTATAACCTGTTCCGTCGTGGGTATGGNTGAAGAATACTAAGTCA
CACCCGTGTTTTAGACAAGGAAATCAGACTCTGGGAGGTAAATGCTGCAG
GTTCAGGTGACCTACACTGGGCATACTTGCTGTGCACCTT
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTAGAACCCACAAGGTGGAAAGAGAA
CCAACTCCTGTAAGTTGTTCTCTGACCTCGACATGTGCACTGTGTATATC
ACACCAAATAAATGTAGTTTTAAATTGTTTGATAAAGAGAGGTTGGGAGG
TAGCTCAGTTTGTCACACAAAAATGAGGACCTGGGTTGGATCCCTAATAC
TCCATGTAAAGATGTGATGATGTGAGCATTGGGGATGTGGACACAGGCAG
ATCTCTTGGGCTCAATGGCCTGCCTTTTTTAATCTCATAGCAAGCCCCAA
GTTCCAGAGACACGGTCNAGTANATCCTAGNCCGNTNNCAAGGTTGTCTT
CTGGTCCTCGTATATACATGCACCCCCAAATNCNTATCNAAACCGGGGGT
GGGGGGGTGAGATATGCAAGGGAAGTCAGCGTTTACAGTAACACCAGAGG
GTCTGCCGAAACCTCATAGCATAGGGAGGGTAGGGACACCCTCCAACCAA
GAGGGTGTGGGCAAGGCTGAGCGTCCATTTGTGGCCCTCACCGACTCGCA
TGCGCAAGGAGTTGAAGGAGTGCCTGTTGATCCCATCCTGCTTGCTCATC
ATGCCCCTGTTAAATTCTACCTAGACCCCGATGTGCACGTGCTTCCCCCT
CCAGTTCCTGCGTACACATGTGCTTTCCTAACCTACCCCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_d24.b1 MSMg01no295_d24.b1 CHROMAT_FILE:
MSMg01no295_d24.b1 PHD_FILE: MSMg01no295_d24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:08 2005
         (322 letters)



>mm_chr8_90683951_90684672
          Length = 722

 Score =  588 bits (304), Expect = e-172
 Identities = 313/316 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttttgttgttttgttttattttgttttttcgaaacagggtttctctgtatcag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttttgttgttttgttttattttgttttttcgaaacagggtttctctgtatcag 264

                                                                       
Query: 65  tctgagtaccacagtgatccctgtcttatcgttgttattttcaaagtctctctgggtatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 265 tctgagtaccacagtgatccctgtcttatcgttgttattttcaaagtctctctgggtgtg 324

                                                                       
Query: 125 gaatttaggcagaatggtgaaggtgatctgtctattgcacaatatctaggcagtgattct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaatttaggcagaatggtgaaggtgatctgtctattgcacaatatctaggcagtgattct 384

                                                                       
Query: 185 ccattaccggtagttgctcctctcccaggggacacttggcaatgtctgaaggtattcctg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccattaccggtagttgctcctctcccaggggacacttggcaatgtctgaaggtattcctg 444

                                                                       
Query: 245 tgagtatgtcttggtggttgctcctggtgtgcagcatggattctaagagacatcctgcac 304
           |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 445 tgagtatgtcttggtggttgctcctggtgtgcagcagggattctaggagacatcctgcac 504

                           
Query: 305 aggagtgctctgtatg 320
           ||||||||||||||||
Sbjct: 505 aggagtgctctgtatg 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)