BAC Information

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BAC

Clone NameMSMg01-295F21
Chromosome8 (Build37)
Map Location 83,912,261 - 83,912,578
singlet/doubletsinglet
Overlap genenone
Upstream geneGypa, Frem3, Smarca5, Gab1, LOC666237, LOC100039496, LOC234501, LOC100039518, Usp38, EG70793, LOC236010, LOC384852
Downstream geneInpp4b, LOC671182, Il15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295F21.T7 (MSMg01no295_f21.b1)MSMg01-295F21.TJ (MSMg01no295_f21.g1)
ACCAG423280AG423281
length742752
length of high quality
(start - end)
325 (43 - 367)291 (74 - 364)
definitionCHROMAT_FILE: MSMg01no295_f21.b1 PHD_FILE: MSMg01no295_f21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:17 2005CHROMAT_FILE: MSMg01no295_f21.g1 PHD_FILE: MSMg01no295_f21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACCATCAAAAATTTTATCAGTGAGGCTGTCAATTCTCATTTCATCATG
GAATGAAATATTTCACATTACCCTGCTGTGCGTAGGAAGAATGTAGAATG
TGGCTTTGTCCCTGTGGTGTCTGATTTGATAGCGCATAAACCCAAGCTAC
ACTTTGATCCATCCATACTTTTTATTCATAGATTCAGGATATAAATATTT
CACTGTCATAAAGAAGAAAAGTCCACTGAGATTAGCATTTCTGTTGCGGA
ATCACCACTAATGCAGACAATAAATCCAGTTCTATACATCTCAGCTTATT
CATGCTGAATCCTGTTTTAGCACACAGCGCTCTCCAGGATGCATGTACTT
TTGTCTCAGTAGCCAACCGACTAACCAATAGACTAGTCATGTGTAAAGCT
GCCATGAATCTCCACTGTAATTCCAAAGCCAGTAAGCAACCTTTCCCAAA
TCCAACCCTGATTAACATACATATTTTATATCTGACCTCTAATGCTCTTA
CTATAATTAAAAGTACCTTAAACATAAGTTACCATCAACAATGATATGTT
GGCTTGACAGTATTTTTCCTTAGTTTGAGGAGTGCTGTCTACCCAGAGAA
GCTGGCTTTTTGCTGGAGTGTGTTTGTTAGTCTTCCCTCTTGTTTTCCTC
TTGTATTTCAGCCTTTGTGCTGAAGCTAATAAACTCATCAAT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACCACTAGTGCAAACTTGAATAAAGGA
ATCCAGGTCCTCTGCTATGTGCATGGGTGTAGAGCCATTCACTGGAGCAT
GGGAAACCAACCCGTGGCCACATCTTCAATAAAGAATTATTTGTTTTGAG
CTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTCTG
TGTCTGTGTGTGTCTGTGTATGATGGAGCTGAAAAAATAGAATAAAAAAG
ATCAAGACAATCATTAAAAGATTTTCTTAGTTAAGACGATTCATGCTGAG
GACTTCTCTAATTTTGGATAGTTTCCAANACCCACCCCAAAATGGGAATA
CTGAAAGGGNTCTCTCACCCCCCCAAAAAAAAAAAAAAAAAAGATTAGGG
GGTTGTCAACAGCAAAATTGGCTTTTCTGAAGTGATAAATTGCTTTGCAT
TTGACACCTCACAAAAGGAGATTTTATTCTTCTATTTTGTATAAGATAAG
CGATTGGCCTTTATGATCATTTCATATTATCTCATTGCTTTTATTATGAT
CCTTGTAACAAACTCCAGTGAATCATTTTTTCTAGGATAACAATAACATA
AAGTCGTAATACTGCATCAATTAATCTTTCTTATCCCTATATATAACATA
TTATATATTTACCCATCTAGTTGACGTTAGCTTAAAATTAATCTTTTTTT
CG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_f21.b1 MSMg01no295_f21.b1 CHROMAT_FILE:
MSMg01no295_f21.b1 PHD_FILE: MSMg01no295_f21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:17 2005
         (325 letters)



>mm_chr8_83912057_83912781
          Length = 725

 Score =  592 bits (306), Expect = e-173
 Identities = 315/318 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaccatcaaaaattttatcagtgaggctgtcaattctcatttcatcatggaatga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gaattcaccatcaaaaattttatcagtgaggctgtcaattctcatttcatcatggaatga 463

                                                                       
Query: 65  aatatttcacattaccctgctgtgcgtaggaagaatgtagaatgtggctttgtccctgtg 124
           ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 aatatttcacattagtttgctgtgcgtaggaagaatgtagaatgtggctttgtccctgtg 403

                                                                       
Query: 125 gtgtctgatttgatagcgcataaacccaagctacactttgatccatccatactttttatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gtgtctgatttgatagcgcataaacccaagctacactttgatccatccatactttttatt 343

                                                                       
Query: 185 catagattcaggatataaatatttcactgtcataaagaagaaaagtccactgagattagc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 catagattcaggatataaatatttcactgtcataaagaagaaaagtccactgagattagc 283

                                                                       
Query: 245 atttctgttgcggaatcaccactaatgcagacaataaatccagttctatacatctcagct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 atttctgttgcggaatcaccactaatgcagacaataaatccagttctatacatctcagct 223

                             
Query: 305 tattcatgctgaatcctg 322
           ||||||||||||||||||
Sbjct: 222 tattcatgctgaatcctg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)