BAC Information

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BAC

Clone NameMSMg01-295L19
Chromosome8 (Build37)
Map Location 78,394,224 - 78,394,528
singlet/doubletsinglet
Overlap gene1700007B14Rik
Upstream geneIsx, Hmgb2l1, Tom1, LOC100039134, Hmox1, Mcm5, Rasd2, LOC675507, LOC384845, LOC666211, LOC100039229, LOC666036
Downstream geneLOC100039185, EG631594, LOC666226, LOC100039211, LOC384847
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295L19.T7 (MSMg01no295_l19.b1)MSMg01-295L19.TJ (MSMg01no295_l19.g1)
ACCAG423547AG423548
length739747
length of high quality
(start - end)
319 (42 - 360)306 (442 - 747)
definitionCHROMAT_FILE: MSMg01no295_l19.b1 PHD_FILE: MSMg01no295_l19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:45 2005CHROMAT_FILE: MSMg01no295_l19.g1 PHD_FILE: MSMg01no295_l19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTGGTTAGCTCTGTACCCCATTTTTAATAGGGTTATTTGTTTCTCTGG
AGTCTAACTTCTTGAGTTCTCTGTATATATTAGATATGAGCCCTTTATTG
GATGTAGAATTGGTTAAGATCGTTTCCCAATCTATTGGTAGCTGTTTTAT
TCTATTGACAGTGTCCTTTGACTTAAATATGCTTTGCAATTTTATGAGGT
TCCATTTGTCAATTCTTGATCTTAGAGTATAAGCTATTGGTGTTCTGTTC
AGGAAAATGTCCCCTGTGCCCAGGTGCGCTCGAGGCTCTTCCCCACCTTC
TTTTCTATTAGTTTTAGTGTCTTTCGCTTCATGTGGAGGTCCTTGATCAA
TTTCGACTTGAGCTCCCCCCAAGAAGATAAGAATGAATTAATTTGCATTC
TTCTACATGCTAATCACCAGTTGAACCAGCATCATTTGTTGAAAATGCTG
TATTTTGTCCACTGGATGGTTTTAGCTCCTTGGTCAATGATCAAGTGACC
ATAGGTGTGTGGGTTCATTTCTGGGTCTTCAGTTCTATTCCATTGATCTA
CCTGCCTGTTACTGTACCAATACCATGCAGTTTTTATCATGATTCCTCTG
TAGTACAGCTTGATGTCTTGATGCTACTTTTCTCAGCAAGCAAACAGCTT
TAAGCTTGACCACAGCTTCAGCATCTGACTCCTTAATAC
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAATCAGGGAATATAACGTGCT
TCTTTTTCTTACTTACAAAAGAACAACAACTATGTTTGAGAAAGCCACAA
CTGTAGCACCACGACAAGTGACTTGTGAAATGTTTAGCCTATCTAGACCG
TTACAAATTTAAGAGATTCTCTCTTTGGAAGAATGTTCCAGAGGGAAAAA
TAAAAGAGTGGCTGGGTAACCTTTTCAAAAGACCCTGGGAAAAATTTTTT
TTTAAATAAGAAAGTGCTGTCAAAAAGGCTCAGTGAAGAGAATAAATTTG
TGATTTATAGGTCTCTTTCCTCATCTGACCACCCCCCCCATAAGGAAAAG
GATTATCCAGGAGACATTGTACACCGAACTCTAAAGAAATAAAATGAGTT
CCCGTGGTGCTTAATGGAAAAGACATATGAGAATTTCATACAAAACACTG
CCAGCCTAGACACAAATGCTAACAGAGCCTATGAAATAAAACAGGAGCTA
CTGGATATCTGGAGTATCCAGAAAGAAGCAGATTTGCACCTTTCATTTAA
AAATGAAAGGCTTAGAAGATAAAACTGAAAGCCATAGGGTTAATCCCCAG
CCCTGCATTTGAGATGTCTTGGTCACAGGACACTAATTCCCTCCTTTTCC
CCATGTTTTCCGTGATTGAGTCAGAATATTTGTCATTCTTTTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_l19.g1 MSMg01no295_l19.g1 CHROMAT_FILE:
MSMg01no295_l19.g1 PHD_FILE: MSMg01no295_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:45 2005
         (306 letters)



>mm_chr8_78394023_78394728
          Length = 706

 Score =  551 bits (285), Expect = e-161
 Identities = 300/305 (98%)
 Strand = Plus / Plus

                                                                       
Query: 2   aatgagttcccgtggtgcttaatggaaaagacatatgagaatttcatacaaaacactgcc 61
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 202 aatgagttcccgtggtgcttaatgaaaaagacatatgagaatttcatacaaaacactgcc 261

                                                                       
Query: 62  agcctagacacaaatgctaacagagcctatgaaataaaacaggagctactggatatctgg 121
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 262 agcctagacacaaatgctaacagagcctgtgaaataaaacaggagctactggatatctgg 321

                                                                       
Query: 122 agtatccagaaagaagcagatttgcacctttcatttaaaaatgaaaggcttagaagataa 181
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 actatccagaaagaagcagatttgcacctttcatttaaaaatgaaaggcttagaagataa 381

                                                                       
Query: 182 aactgaaagccatagggttaatccccagccctgcatttgagatgtcttggtcacaggaca 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aactgaaagccatagggttaatccccagccctgcatttgagatgtcttggtcacaggaca 441

                                                                       
Query: 242 ctaattccctccttttccccatgttttccgtgattgagtcagaatatttgtcattctttt 301
           ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 442 ctaattccctcctttcccccatgttttctgtgattgagtcagaatatttgtcattctttt 501

                
Query: 302 ttttc 306
           |||||
Sbjct: 502 ttttc 506


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 706
Length adjustment: 9
Effective length of query: 297
Effective length of database: 697
Effective search space:   207009
Effective search space used:   207009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)