BAC Information

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BAC

Clone NameMSMg01-297F05
Chromosome8 (Build37)
Map Location 112,596,715 - 112,597,145
singlet/doubletsinglet
Overlap genenone
Upstream gene4922502B01Rik, Gm1943, LOC100042829, Pmfbp1, Dhx38, Txnl4b, Hp, Dhodh, Pkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089, LOC672735, Ap1g1, Phlppl, Marveld3, LOC100041884, Tat, Chst4
Downstream geneZfp612, Gm1467, Calb2, BC025546, Hydin, LOC672398, Vac14, BC060632, 2010004A03Rik, Sf3b3, Cog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-297F05.T7 (MSMg01no297_f05.b1)MSMg01-297F05.TJ (MSMg01no297_f05.g1)
ACCAG424690AG424691
length802742
length of high quality
(start - end)
445 (131 - 575)427 (74 - 500)
definitionCHROMAT_FILE: MSMg01no297_f05.b1 PHD_FILE: MSMg01no297_f05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:33:45 2005CHROMAT_FILE: MSMg01no297_f05.g1 PHD_FILE: MSMg01no297_f05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:33:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTACTTTTTTTTTTCTCCCACCCGTTCCCCCCGTTNCCNCNNCTCTTCCN
TCCCTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCGAGGAT
GCCGCGGAATTCCTTCCCATACCTCCTTCAGTGCCATGGAAGTGTAAGCC
AAATAAACCCTTTCTTACCCACTCTGCTTTTGGTCCTGGTGTTTTATCAC
AGCAATAGTAACCAGAACCGAGACACAATGTCAAATTTTAGGAATATAGA
GCTGTTTTGTGGGCTGTCATTCGTTTCCAGAATTAAATAAGGAAGGGTGA
CCACATAGGCAGAATCAGAACAGCGTGTTCTCAGCAGGGCCGAGGTTCAG
GGTTAGAGAGTCTGACAACTAGACATTGCGGTCATCACGATTTTTGTGTA
GTTCAGTCATCTTCAGGAGCCCCCCTGTGGACCTCCGGTTGAGACCCATG
CAGTAGGCAGTCGTGTGGCATTTAAGGGTCTTGCTTTAAGTACCGTTGTA
ACTTCCTTTCTCTCTGTCTTGCCACAACTAAGTGCCCTTAATTCAGTGTC
CCTAACCTTTAGGGGCATCTTCAGGGTGTGGAATTTTAAAATGCAAGCGC
TCACCCATTGCTTCTGCCTTTCTTCAATCTGTTATTTTGTTTCATGATCC
TGAGTCTTAATGATTTCATGGCTAGCACTTATAGCATAGGCCCTCTTTCA
CATAACTTGTGTTAAGCCTGTATCATTTTGTTTTACAGGTAGCATAATGT
TCAAAGTCTTTAAAAATATTCGAGGGAATACTAGGACCACGCGAATCCCC
CC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCAGAAATTCTTCTGATACAGAATGCCAGCTGAG
ACATCCAACCTCGTAGACTGAACAACTACTGGATTCTTGGACCCTTCGTT
GGTAGACAGCCATCGTTGAGCAAGCTGGACCACAGCCTGTAAACCACTCT
AATAAATCTCCTTTCCATATGTATCACGACAGGTTCATTCTTTAAATTCG
GTTCCTTGGAAGAACCTTGACTAATACACCTTCTCATTCTTGGAGGTTCT
TGTGGCCGAGACAAATATGGTGCTCTTCACAGCCCTTCACATGGATGCAT
GGTTATCTGTTTGCCCGTCCATCTTCTCCACTAGACTCAGAAGTCCTCAA
AGGACTGATGACACGTGCTTTTGTCACGGAAGTTTCCCGTTCACTGAACC
CCTACATGTATCAGATAGCCCCATGGGTAGCATTTTCTCCATTTTGCAGA
TAATAAAGTTGAGGCTCCATAAGGCTAATATATTTAATCGCTGGTATCCA
TTCAGAGAGCAACAATAGCTCACAGTTCAAATCTGTGACTATCACCCATC
TATAATGACCTTATCCTCTTTGTTGGATGCTGCGACCTATTCTTCTATAC
CGTTTTTTGCTAATTTGACTAAGGATTTTTGAGTGGGCTGAATTTAATCA
TACGGATTTTTTTAAGAGAGGTTATCAGTTACTGACCGAATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no297_f05.b1 MSMg01no297_f05.b1 CHROMAT_FILE:
MSMg01no297_f05.b1 PHD_FILE: MSMg01no297_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:45 2005
         (445 letters)



>mm_chr8_112596515_112597359
          Length = 845

 Score =  741 bits (383), Expect = 0.0
 Identities = 423/445 (95%), Gaps = 14/445 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgccatggaagtgtaagccaaataaaccctttcttacccactctgcttttggtcctggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgccatggaagtgtaagccaaataaaccctttcttacccactctgcttttggtcctggt 260

                                                                       
Query: 61  gttttatcacagcaatagtaaccagaaccgagacacaatgtcaaattttaggaatataga 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 gttttatcacagcaatagtaaccagaaccgagacacaatgtcaatttttaggaatataga 320

                                                                       
Query: 121 gctgttttgtgggctgtcattcgtttccagaattaaataaggaagggtgaccacataggc 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctgttttgtgggctgtcattcatttccagaattaaataaggaagggtgaccacataggc 380

                                                                       
Query: 181 agaatcagaacagcgtgttctcagcagggccgaggttcagggttagagagtctgacaact 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaatcagaacagcgtgttctcggcagggccgaggttcagggttagagagtctgacaact 440

                                                                       
Query: 241 agacattgcggtcatcacgatttttgtgtagttcagtcatcttcaggagcccccctgtgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agacattgcggtcatcacgatttttgtgtagttcagtcatcttcaggagcccccctgtgg 500

                                                                       
Query: 301 acctccggttgagacccatgcagtaggcagtcgtgtggcatttaagggtcttgctttaag 360
           |||| ||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 501 acctgcggctgagacccacgcagtaggcagtcatgtggcatttaagggtcttgctttaag 560

                                                                       
Query: 361 taccgttgtaacttcctttctctctgtcttgccacaactaagtgcccttaattcagtgtc 420
           |||||||||||||||||||||||||||||||||| ||||||||||||||||         
Sbjct: 561 taccgttgtaacttcctttctctctgtcttgccataactaagtgcccttaa--------- 611

                                    
Query: 421 cctaacctttaggggcatcttcagg 445
                ||||||||||||||||||||
Sbjct: 612 -----cctttaggggcatcttcagg 631


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 845
Length adjustment: 10
Effective length of query: 435
Effective length of database: 835
Effective search space:   363225
Effective search space used:   363225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)