BAC Information

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BAC

Clone NameMSMg01-297N21
Chromosome8 (Build37)
Map Location 120,335,501 - 120,498,136
singlet/doubletdoublet
Overlap genenone
Upstream gene2310061C15Rik, 2610510J17Rik, BC060631, 1700030J22Rik, Gcsh, Pkd1l2, Bcmo1, Gan, 4933407C03Rik, Plcg2, 4632417N05Rik, Hsd17b2, Mphosph6
Downstream geneCdh13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-297N21.T7 (MSMg01no297_n21.b1)MSMg01-297N21.TJ (MSMg01no297_n21.g1)
ACCAG425074AG425075
length760757
length of high quality
(start - end)		595 (77 - 671)563 (74 - 636)
definitionCHROMAT_FILE: MSMg01no297_n21.b1 PHD_FILE: MSMg01no297_n21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:24 2005CHROMAT_FILE: MSMg01no297_n21.g1 PHD_FILE: MSMg01no297_n21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,497,542 - 120,498,136)(120,335,501 - 120,336,063)
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCG
GAATTCTTTTCATTTTTCCCTCCAGCATTCAAATTTGAAGTTTTCAAAGA
TAATTTTAAAAAATCTATGCTTTGTGCTTCTCAGAAAAAAAATAATGAAT
CATAGATTATAATAATTCAGAACTAAAATGTACAATCCTTGAATGCCAAC
TATGTGGGCTGAATAGGCCGGGATTATGGCAGTGGGGGTGGGGCGGGTAC
TCTGCAGTAGCCTACAGAGTCTGCATTTGGAACAGTGCTAGGCCTAGGAG
TGGCGCACACTCTAAGACCAGGATTGTCTAATCGGGGCAAGTAAGAAAGA
ACGGAATCAATGTGGATCATGGCTATATAGTTCATGTAGGGAAGGCGCCC
ACTGCACTGTTGAACCATCACAACTGCGTCTGACTGCCCGAGATCAGCAA
AAGATTCAGCTATCAGTCTTCTGAGGTGGGAGGTACTCACAGGGCCCCGT
CCATCTGTGGCGGAGAATCACTAGGGAGTTAATACTTGCAAAGACGTTTA
CTTTGGTGATCAATTGCCCAAGCTTCTGTAAGCAAGCCCTTGCCCTGTTC
CTATAACTAAGCCTTTTAAACCCATTGGTTCATTGCCCCCCTACTCCAAA
TAAAAGAAGGAAAAGGAAGAGGAGGAGGAGGAGGAGGAAGAGGAAGGTCA
GGCCCCACTTCCTTTTCTTTCTTTCTTCTCTCGTTCCCTCTCCTCTTCCC
CTTCTTCCCT

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTTCCCTCTGTGAAGATCATGTGAAA
CAGTACACACAAGCCCGTGTCACCGGAAGTACACAGCTCTGCAGATGTGG
AGGAAGGCCACTACTGCCCAGAGGGGGTTGCTTTATGGCCACTTTCATTG
GCATGGTTGATTTTAAGTGGCATAGTATGAACTATTCATACTATGTATGC
ATGAACGAACTACCATAGATGCGGAGGTGTAAAACCTGGTATACATCTTC
ATTCTCCTTAAATCTACTCGAAGGCAATTCTAAGATCTTATTGTTCTGCT
GGCTTGGCAGGAATTAAATGTAAACACTTGTCAGTACTTTCCTGTTCCAA
ACATGGTACGGTGGTGACAGACTTTGGGGGTGTAGGTGAAGTGCATGTGA
TCACTGGTGTACTGGCTAGTTTTGTGTCAACTTGACACAGCTGGGGTTAT
CACAGAGAAAGGAGCTTCAGTTGAGGAAATGCCTCCATGAGATCCAACTG
TAAGGCATTTTCTCAATTAGTGATCAAGGGGGAAAGGCCCCTTGTGGGTG
GGACCATCTCTGGGCTGGTAGTCTTGGGTTCTATAAGAGAGCAGGCTGAG
CAAGTCAAGGGAGGCAAGCCAGTCAAGAACATCCCTCCATGGCCTCTGCA
TCGGCTCCTGCTTTCTGACCTGCTTGAGTTCCAGTCCTGACTTCCTTGGT
GATGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no297_n21.b1 MSMg01no297_n21.b1 CHROMAT_FILE:
MSMg01no297_n21.b1 PHD_FILE: MSMg01no297_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:24 2005
         (595 letters)



>mm_chr8_120497442_120498436
          Length = 995

 Score = 1143 bits (591), Expect = 0.0
 Identities = 594/595 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcaaatttgaagttttcaaagataattttaaaaaatctatgctttgtgcttctcagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 attcaaatttgaagttttcaaagataattttaaaaaatctatgctttgtgcttctcagaa 636

                                                                       
Query: 61  aaaaaataatgaatcatagattataataattcagaactaaaatgtacaatccttgaatgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 aaaaaataatgaatcatagattataataattcagaactaaaatgtacaatccttgaatgc 576

                                                                       
Query: 121 caactatgtgggctgaataggccgggattatggcagtgggggtggggcgggtactctgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 caactatgtgggctgaataggccgggattatggcagtgggggtggggcgggtactctgca 516

                                                                       
Query: 181 gtagcctacagagtctgcatttggaacagtgctaggcctaggagtggcgcacactctaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gtagcctacagagtctgcatttggaacagtgctaggcctaggagtggcgcacactctaag 456

                                                                       
Query: 241 accaggattgtctaatcggggcaagtaagaaagaacggaatcaatgtggatcatggctat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 accaggattgtctaatcggggcaagtaagaaagaacggaatcaatgtggatcatggctat 396

                                                                       
Query: 301 atagttcatgtagggaaggcgcccactgcactgttgaaccatcacaactgcgtctgactg 360
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 395 atagttcatgtagggaaggcgcccactgcactgttgaaccatcacaactgtgtctgactg 336

                                                                       
Query: 361 cccgagatcagcaaaagattcagctatcagtcttctgaggtgggaggtactcacagggcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 cccgagatcagcaaaagattcagctatcagtcttctgaggtgggaggtactcacagggcc 276

                                                                       
Query: 421 ccgtccatctgtggcggagaatcactagggagttaatacttgcaaagacgtttactttgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ccgtccatctgtggcggagaatcactagggagttaatacttgcaaagacgtttactttgg 216

                                                                       
Query: 481 tgatcaattgcccaagcttctgtaagcaagcccttgccctgttcctataactaagccttt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 tgatcaattgcccaagcttctgtaagcaagcccttgccctgttcctataactaagccttt 156

                                                                  
Query: 541 taaacccattggttcattgcccccctactccaaataaaagaaggaaaaggaagag 595
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 taaacccattggttcattgcccccctactccaaataaaagaaggaaaaggaagag 101


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space:   576225
Effective search space used:   576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no297_n21.g1 MSMg01no297_n21.g1 CHROMAT_FILE:
MSMg01no297_n21.g1 PHD_FILE: MSMg01no297_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:24 2005
         (563 letters)



>mm_chr8_120335301_120336263
          Length = 963

 Score = 1089 bits (563), Expect = 0.0
 Identities = 563/563 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttccctctgtgaagatcatgtgaaacagtacacacaagcccgtgtcaccggaagtaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttccctctgtgaagatcatgtgaaacagtacacacaagcccgtgtcaccggaagtaca 260

                                                                       
Query: 61  cagctctgcagatgtggaggaaggccactactgcccagagggggttgctttatggccact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagctctgcagatgtggaggaaggccactactgcccagagggggttgctttatggccact 320

                                                                       
Query: 121 ttcattggcatggttgattttaagtggcatagtatgaactattcatactatgtatgcatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcattggcatggttgattttaagtggcatagtatgaactattcatactatgtatgcatg 380

                                                                       
Query: 181 aacgaactaccatagatgcggaggtgtaaaacctggtatacatcttcattctccttaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacgaactaccatagatgcggaggtgtaaaacctggtatacatcttcattctccttaaat 440

                                                                       
Query: 241 ctactcgaaggcaattctaagatcttattgttctgctggcttggcaggaattaaatgtaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctactcgaaggcaattctaagatcttattgttctgctggcttggcaggaattaaatgtaa 500

                                                                       
Query: 301 acacttgtcagtactttcctgttccaaacatggtacggtggtgacagactttgggggtgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acacttgtcagtactttcctgttccaaacatggtacggtggtgacagactttgggggtgt 560

                                                                       
Query: 361 aggtgaagtgcatgtgatcactggtgtactggctagttttgtgtcaacttgacacagctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggtgaagtgcatgtgatcactggtgtactggctagttttgtgtcaacttgacacagctg 620

                                                                       
Query: 421 gggttatcacagagaaaggagcttcagttgaggaaatgcctccatgagatccaactgtaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gggttatcacagagaaaggagcttcagttgaggaaatgcctccatgagatccaactgtaa 680

                                                                       
Query: 481 ggcattttctcaattagtgatcaagggggaaaggccccttgtgggtgggaccatctctgg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggcattttctcaattagtgatcaagggggaaaggccccttgtgggtgggaccatctctgg 740

                                  
Query: 541 gctggtagtcttgggttctataa 563
           |||||||||||||||||||||||
Sbjct: 741 gctggtagtcttgggttctataa 763


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space:   527009
Effective search space used:   527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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