BAC Information

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BAC

Clone NameMSMg01-298K21
Chromosome8 (Build37)
Map Location 97,430,607 - 97,431,100
singlet/doubletsinglet
Overlap geneCcdc102a
Upstream geneGnao1, Amfr, Nudt21, Ogfod1, Bbs2, Mt4, Mt3, Mt2, Mt1, Nup93, LOC100041555, Slc12a3, Herpud1, EG434339, AI451557, Cpne2, 2310065K24Rik, Rspry1, Arl2bp, Pllp, Ccl22, Cx3cl1, 1700121C10Rik, Ccl17, Ciapin1, LOC664947, Coq9, Polr2c, Dok4, LOC100040942
Downstream geneGpr114, Gpr56, Gpr97, Gm770, Katnb1, Kifc3, BC016201, Map1lc3-ps6, 1700055M20Rik, Zfp319, AA960436, Mmp15, Gtl3, Csnk2a2, 4933406B17Rik, Ccdc113, 4931432M23Rik, EG546088, LOC100041040, Gins3, LOC547022, Ndrg4, Setd6, Cnot1, LOC100041953, LOC100041088, BC031853, LOC100041972, Got2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298K21.T7 (MSMg01no298_k21.b1)MSMg01-298K21.TJ (MSMg01no298_k21.g1)
ACCAG425668AG425669
length752906
length of high quality
(start - end)		496 (49 - 544)---
definitionCHROMAT_FILE: MSMg01no298_k21.b1 PHD_FILE: MSMg01no298_k21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:25 2005CHROMAT_FILE: MSMg01no298_k21.g1 PHD_FILE: MSMg01no298_k21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAAAAGCGCGCG
GAATTCAATGCCAGCTTGCGCTACATGAGACTCTTTTTATTATTATTATT
ATTATTATTATTATTATTATTATTATTATTATTATTAATCAAAATACTTG
AGCCTAGGCACTTCAGATAAAAGATACTCAACCTGCAACTGCATTGACTA
AACTCCTATAAGATAAAGCAGTTGATAATTATAGTAGCTCTGTATGCTGA
ACACCTACTGTGCGATCCTGGCAGCAATGAGCAGACAGGTGTGTCTACCT
GTTTCACGAATGATGGTTTAAAGGAACAAAAGTGCTGTCTCCATCACATG
GTCAGGCCTGATCCTGAAAAGGTTTCCCTTGGGGGTGGGGGTAGGGGTCA
GTGGGGGACAGCGACTTTGAGCTGAGGTCTGCTGGAGAAGCAGAAGTTAA
CTGGTGGTAAACTGACCTTCCAGAGGGTAGAGCGAGAACAGGGGAGTCCC
AGAAGAAATGAGGACTCTGTCTGGGTAGGGGTGACAAGGGGGCCCAGGTA
GACGAAACAGGATCCATGGCTGCAGTGTGATAGCAGCCAGCAGGGGTGAA
GCGCCAAGCTGTCAGGTGGCAGGCTGTACTAAGACAGAGGATGGGAGGCC
ATTGCAGTTCCCAAGGTCACCATTTTATGCCAGACAATGCACCCCCGCTG
GAGTACATAGTACCGTACGGTACCTATGATCCTTTCAATAACATATGAGA
CN

CCATGACAGTGGTAGGCCTGGCGGCGCCTGGCCTCCTTACCCGCTGAACT
ATAGAAGGACTGCAATACGCAATAGTCTTGTTAAAATTTGGTTTTTGTTG
TTGTTGTTTTGGTTTGGTTCTCTGGTTTTTGGTTTTTATTTATTTTTGCT
TCTCCACCAAATCCAAAAACATACAAACATCTCCACTCCTCCAAAACACA
CACCCTCTGCATACACACACAACCATCCTACCCACATAATCCAAAAACAA
CCCACACTTATCACCAAACCAAAACACCCCCCCCCACAACAAAACCCCAA
CCAAAAACAACCTCCAACCCAAAAATCTCAATAACTTTCCAACCCCAAAA
ACAAAAAAAAACCAACAAACAATAATCTACACCCCCCCCCCCCCCCCCCA
CAAACACAAATACACATACTCCCAAACCAAAAAATCCACACCCCCCATAA
CAAACAACAACAAACCCAAAACACCATACAAAACAACCACAAATAAAATG
ACCCCAAACAACATACACCACCCAATAAACCCAAAAAAAATCACAAACTC
CCAACCACCAACAACACAATAACAACACCCCACAAAACCCACAAACCCAA
CAACAAATCCAAACCATCTCCAATAAAAAATATCACCCCTAACCAACACA
AAACACCACCCCCCCCACCCAACAAAACTAAACAACCCCAACCAACCACA
ACAATAAACCACACAAACCACCCTCAAACCACCACAAATACTACCAAAAC
ACCCCCCCCCCCCACCACATAAAAAAAAAAATCACCCCATATTCTTCCCA
CCCACCACAAACACCTAATCAACAATAACCACCCCTCCCCGATAAAATAA
TCAAACACCACCCAAAAACACCCCATAACACCATCTAATCCACACAACAT
ACTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_k21.b1 MSMg01no298_k21.b1 CHROMAT_FILE:
MSMg01no298_k21.b1 PHD_FILE: MSMg01no298_k21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:25 2005
         (496 letters)



>mm_chr8_97430318_97431213
          Length = 896

 Score =  919 bits (475), Expect = 0.0
 Identities = 490/495 (98%), Gaps = 2/495 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   gaattcaatgccag-cttgcgctacatgagactctttttattattattattattattatt 61
           |||||||||| ||| || | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 gaattcaatgtcagcctag-gctacatgagactctttttattattattattattattatt 725

                                                                       
Query: 62  attattattattattattattattattaatcaaaatacttgagcctaggcacttcagata 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 attattattattattattattattattaatcaaaatacttgagcctaggcacttcagata 665

                                                                       
Query: 122 aaagatactcaacctgcaactgcattgactaaactcctataagataaagcagttgataat 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 aaagatactcaacctgcaactgcattgactaaactcctataagataaagcagttgataat 605

                                                                       
Query: 182 tatagtagctctgtatgctgaacacctactgtgcgatcctggcagcaatgagcagacagg 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 tatagtagctctgtatgctgaacacctactgtgcgatcctggcagcaatgagcagacagg 545

                                                                       
Query: 242 tgtgtctacctgtttcacgaatgatggtttaaaggaacaaaagtgctgtctccatcacat 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tgtgtctacctgtttcacgaatgatggtttaaaggaacaaaagtgctgtctccatcacat 485

                                                                       
Query: 302 ggtcaggcctgatcctgaaaaggtttcccttgggggtgggggtaggggtcagtgggggac 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ggtcaggcctgatcctgaaaaggtttcccttgggggtgggggtaggggtcagtgggggac 425

                                                                       
Query: 362 agcgactttgagctgaggtctgctggagaagcagaagttaactggtggtaaactgacctt 421
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 agcaactttgagctgaggtctgctggagaagcagaagttaactggtggtaaactgacctt 365

                                                                       
Query: 422 ccagagggtagagcgagaacaggggagtcccagaagaaatgaggactctgtctgggtagg 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ccagagggtagagcgagaacaggggagtcccagaagaaatgaggactctgtctgggtagg 305

                          
Query: 482 ggtgacaagggggcc 496
           |||||||||||||||
Sbjct: 304 ggtgacaagggggcc 290


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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