BAC Information

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BAC

Clone NameMSMg01-301A15
Chromosome8 (Build37)
Map Location 114,177,958 - 114,178,478
singlet/doubletsinglet
Overlap geneZfp1
Upstream geneVac14, BC060632, 2010004A03Rik, Sf3b3, Cog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1, Rfwd3, LOC547023, Mlkl, Fa2h, Wdr59, Znrf1, Ldhd
Downstream geneCtrb1, Bcar1, Cfdp1, Tmem170, Chst5, 4932417I16Rik, Gabarapl2, Adat1, Kars, Terf2ip, EG627828, LOC672498, LOC100042040, Cntnap4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-301A15.T7 (MSMg01no301_a15.b1)MSMg01-301A15.TJ (MSMg01no301_a15.g1)
ACCAG427350AG427351
length1,002760
length of high quality
(start - end)		---521 (65 - 585)
definitionCHROMAT_FILE: MSMg01no301_a15.b1 PHD_FILE: MSMg01no301_a15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:20 2005CHROMAT_FILE: MSMg01no301_a15.g1 PHD_FILE: MSMg01no301_a15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:20 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
GCGCGCCTGAGAGGAACGCCTGATATGCACAAAAAGAGGGNGNNNNNNNN
NGANNGTTTTCCCAAAAAAGAGAGGGTTTTGGGAGAGAGAAATGGAGGGG
TTAAGAGTAAGGTATGTTATTTTTTTTTTACCACTAAAAACAGAGGGTGT
ATATGATGTATTGGGTAATAAATTGATGTAGGGAAATAAATAAAGGTGGA
ATGGGTAGGTATGTCATCTAGGTGTGAATATAGTTATCGGCACGGGTGGG
GTGGTGTGTGCCCGGATTCATTGTAAGAGACACGCCGTGCGTTTTAGGTG
TTGCGTTTGATCCGTGTTGATTTTGCGGGGACGGTAAGGCTTTATTAGCA
TATCGCGGCTCGCGCCTTTTTTTTTTTTGCATTCGTACCTTGCAATTCTT
ATTTCCCATTTACCTTTTTGTTGTTATTCCCCCCCCCCCCCCCCTCTGTT
AAGTTTTGCACTTTGTGTTCTTGTGCGCCCCCCCCCCCCGGGCGGAAAAA
ATAGAAAAAAAGATTTTGGGGGGGGGGGTGGCGGGCCGTATGTCGAGACC
TAATGAGATAAATAGCTATTTCCGAGTGTTGTCTTCTGGTCGCGTTTTGA
TCGCGCCATTATTTTACGTTACTGCCGGTCTATTAAGGCGTGTGCCCTCT
ACTTTCGTGCGGTGGTATAATCACGCGGCCATATACCTCGCGCCGCCCTT
TCCCGTCGGTTATTCGTGTTTATATTTAGCCACGGCTATTAACATATGCC
ACCTTTTAGCCTACGTTTTCGCTTTACGTTTCTTCCCGTCCTGTCTCTTG
TGTTATTGGTGGTCGTCGTACCTCCGCGTATTGACTATTGTGTTTATGCT
CCGTGCGGTCATTTGGTTCTATCTCTGCACTTCCTATTGTACTGCCTTAC
GCTTTTTTGGCTTACGTTATCTTAGCGGGTCGTGTTATTAGCTCCGGCCG
TCACGTAGAGCGAGTTTATCTGCGCCCGCGCACTATCGGGTCTATAGGTA
TT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCACCCAAAACTAATCAAAAAGACAGGGAAGGACACT
ACATACTCAAAGCAAAAATCCACCAAAATGGCATGCCAATTCTTAACATT
TATGCCCCAAACACAAAGGTGGAGGTGAGCAGGCCTCTGCTGGGAAAGGC
ACATGAGTGTAATGCAGGCTGCTCTCCACACGGCAAGGACCTGTGGGGAT
ATGCATGCAGCATCTTGTGGTCTTTCCTGAGGGAACGCTTAGTTCACCTT
TGCCTTGTGTTTGCATTCCTGGCTTTGCTAGTGCAAGTCTTTACCTTCAC
TCTGTCTATGACAGATGCTTGCCCAGAATCAGAAAAAGGAAGCTTGGACT
GTGGTTCATTCTTGTTTGTCTCTGAGCATCATGGGAGTGGAACAGATCAC
TACTCCTCTGATTGTTAATGATGGTGATGTGGTTGAGTCAACACAGGGCC
CTGGTCTGGGTACATCAGCTAAAGTTCAGATGTTTTCTTCTGATGAGAAC
TTAGTTCTGACAGCAATCTGCCCACCAATTTGTCCAAATAACAACTAGAT
GATTATTAAAAGGTGAGAAGGCAGCATTGCGTCCCAGACTTATCAGGAGT
GTTCACAGGCCAGCCCCGTAAGGACCAGGAACTGATTCAGGTTACCAATC
TGTCGAAAGCTTGCACCATAGCAAGACTCTATTCTCCTGATTACGATATG
AAGTAATGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no301_a15.g1 MSMg01no301_a15.g1 CHROMAT_FILE:
MSMg01no301_a15.g1 PHD_FILE: MSMg01no301_a15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:20 2005
         (521 letters)



>mm_chr8_114177653_114178573
          Length = 921

 Score =  977 bits (505), Expect = 0.0
 Identities = 517/521 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacccaaaactaatcaaaaagacagggaaggacactacatactcaaagcaaaaatccacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 cacccaaaactaatcaaaaagacagggaaggacactacatactcaaagcaaaaatccacc 767

                                                                       
Query: 61  aaaatggcatgccaattcttaacatttatgccccaaacacaaaggtggaggtgagcaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 aaaatggcatgccaattcttaacatttatgccccaaacacaaaggtggaggtgagcaggc 707

                                                                       
Query: 121 ctctgctgggaaaggcacatgagtgtaatgcaggctgctctccacacggcaaggacctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 ctctgctgggaaaggcacatgagtgtaatgcaggctgctctccacacggcaaggacctgt 647

                                                                       
Query: 181 ggggatatgcatgcagcatcttgtggtctttcctgagggaacgcttagttcacctttgcc 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 ggggatatgcatgcagtatcttgtggtctttcctgagggaacgcttagttcacctttgcc 587

                                                                       
Query: 241 ttgtgtttgcattcctggctttgctagtgcaagtctttaccttcactctgtctatgacag 300
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 586 ttgtgtttgcattcctggctttgctagtgcaagtctttacctttactctgtctatgacag 527

                                                                       
Query: 301 atgcttgcccagaatcagaaaaaggaagcttggactgtggttcattcttgtttgtctctg 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 526 atgcttgcccagaatcagaaaaaggaagcttggactgtggttcattcttgtttgtcgctg 467

                                                                       
Query: 361 agcatcatgggagtggaacagatcactactcctctgattgttaatgatggtgatgtggtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 agcatcatgggagtggaacagatcactactcctctgattgttaatgatggtgatgtggtt 407

                                                                       
Query: 421 gagtcaacacagggccctggtctgggtacatcagctaaagttcagatgttttcttctgat 480
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gagtcaacacaaggccctggtctgggtacatcagctaaagttcagatgttttcttctgat 347

                                                    
Query: 481 gagaacttagttctgacagcaatctgcccaccaatttgtcc 521
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gagaacttagttctgacagcaatctgcccaccaatttgtcc 306


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space:   465521
Effective search space used:   465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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