BAC Information

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BAC

Clone NameMSMg01-301L24
Chromosome8 (Build37)
Map Location 112,943,721 - 112,944,215
singlet/doubletsinglet
Overlap geneHydin
Upstream geneLOC100042829, Pmfbp1, Dhx38, Txnl4b, Hp, Dhodh, Pkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089, LOC672735, Ap1g1, Phlppl, Marveld3, LOC100041884, Tat, Chst4, Zfp612, Gm1467, Calb2, BC025546
Downstream geneLOC672398, Vac14, BC060632, 2010004A03Rik, Sf3b3, Cog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1, Rfwd3, LOC547023, Mlkl, Fa2h
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-301L24.T7 (MSMg01no301_l24.b1)MSMg01-301L24.TJ (MSMg01no301_l24.g1)
ACCAG427853AG427854
length7571,094
length of high quality
(start - end)		499 (38 - 536)---
definitionCHROMAT_FILE: MSMg01no301_l24.b1 PHD_FILE: MSMg01no301_l24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:13 2005CHROMAT_FILE: MSMg01no301_l24.g1 PHD_FILE: MSMg01no301_l24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCC
AACTCTCTACCCAGTCCTTCATCCCTGCAGTATTTCGGGCTCGCATGGTG
AGTAAGTCCTGGGCTATCACAGCTTTGGCTGTGTCCAGTGTCCCTATTTT
TAGCAACATGTGTTTAAAAATGAGTTGCCAGAGCAGAGATTCTCATGGCT
AAGCAGTAGGAAACTGTGTGGCTCCCATCCTTAGTTCTCTTTATTATAGT
CCTTTTGTTAACCAAGAAGCACAATATACACATTTGGTAAGCAAGCAGAC
ACAGTTCATATAATCCCATTTGGGAAGATGTTTGAGAAGCAACCAGCTGT
AGCTCTCACTGAAGACATTAGCTCCAAGCCCTCTGAAGAACATTGTCTCT
TTGATTCCTGTTGGATATACATTTCTTAGTTTGCTTTTTTGTTTGTTGGT
TCGTTTGATGGTGTAGTTTTGTTTGGTTTTGTTCTTCCCTTTCTTCAAAG
ACTATTTCNATGCAATTTATAAGGATGTATCAAGGCCAGAGAGATGGGTA
CACAGTTTAGAGTCCTTGCTGAACTTAGTTCTCAGTACCTATATTGGATG
GCTAACTCCAGCTCCAAGTGATCCAGCACCCCCTTCTGGCCTCCCCAGGC
AATTGCACTCTTGAATACACATACCCCCCGAAACCCGCTNATTAAAAAAA
AAAAATGTCTCTTAACGACGGATCCCTCTCTAAAATCTAATATGGCGACA
ATGGAAG

GTAGGTAATGGCTTAGGTCGTCACGTCTCGTCTCGTACCATCTCTCAAGC
TCGACTCTCCTACGAAGTGTCTCCGCTGCCAATTCTGCCCCACCAACCCC
ATCGTTTAATTCACGTTAGCGTCGAATCATGAACAGTAGTTTATTATTCA
CCACCTGTAGATACTAACTCTAGTGTTTACCCGCCTTCTCCTTATTATCC
CTACTGCGCGCACCGCTCCCAGCACGCGACCCCAGGGGCCGTGGCTATCT
CGAGTACACATGTATGCAGAGTCATGATGATCTGTACTCTGTCGACTCAT
GCTTCTTTACGCCATCTGCCTCCTTTCCTTTCTTGCCAGTTTTCCATCCT
CTTTCGCGCCCGCCCACACATATATATTCTAACATGTTATCACCTTTCCA
TCACAGTCCCACTAATCCCCATGTCCCGCCAACAGCACGTGTTATTAAGT
TGAAGAGCTCCGCCGTACACGCACTATATGATAATATTATAATTTATAAC
TTCCAGTGATTCTCTCCCACATAGTATTACGCCGGTAACCTATTTTATAT
GTACATACTGACGACATACTCATGTCTTTTCTCTGTCTCGACTAATATCT
ATTTCCTAACAATTCTGCTATGATATCCACGCCTTACTACTTCTCTTCCT
CCTCCCCAGTCTCATTCCTCTATTTCTCCGCTCTTCACTTTTGATATCCA
GATACACAATATTAGCGTTGTCCTCATAATTATCGCCACTACCTCTATTT
ATAACAATAGACTTAAAATACTATCCTCATTTTCCTTAGGATACTTAGAC
TGATCAACCTCATATCCTCCCTCGTGTAAAACTCACAGAAGAAAAACTCC
GCCCATAAATTCCACTGACCTCTCCGTGTTTATTGACCTTGTTCTAGCAG
TACACGTCTTCCGTTAGGCATACACACCTAGTACGTCACCTTTGTCTTCT
CTCCAAGCGGAAGCTAGTGTAACGTATTGTTATCCGCACCATCGATCACC
CTCACCGCCGCTAACGATAACGCTATTGTTATTCCCAACCCTTCTCCGCA
TCTCCCACTCCCCATATGTCGCCCCGCTCGGCACCTATAAATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no301_l24.b1 MSMg01no301_l24.b1 CHROMAT_FILE:
MSMg01no301_l24.b1 PHD_FILE: MSMg01no301_l24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:13 2005
         (499 letters)



>mm_chr8_112943517_112944416
          Length = 900

 Score =  876 bits (453), Expect = 0.0
 Identities = 485/496 (97%), Gaps = 2/496 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctccaactctctacccagtccttcatccctgcagtatttcgggctcgcatggtga 64
           |||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 205 gaattctccagctctctaaccagtccttcatccctgcagtatttcgggttcgcatggtga 264

                                                                       
Query: 65  gtaagtcctgggctatcacagctttggct-gtgtccagtgtccctatttttagcaacatg 123
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 265 gtaagtcctgggctatcacagctttggcttgtgtccagtgtccctatttttagcaacatg 324

                                                                       
Query: 124 tgtttaaaaatgagttgccagagcagagattctcatggctaagcagtaggaaactgtgtg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtttaaaaatgagttgccagagcagagattctcatggctaagcagtaggaaactgtgtg 384

                                                                       
Query: 184 gctcccatccttagttctctttattatagtccttttgttaaccaagaagcacaatataca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gctcccatccttagttctctttattatagtccttttgttaaccaagaagcacaatataca 444

                                                                       
Query: 244 catttggtaagcaagcagacacagttcatataatcccatttgggaagatgtttgagaagc 303
            |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 445 tatttggtaagcaagcagatacagttcatataattccatttgggaagatgtttgagaagc 504

                                                                       
Query: 304 aaccagctgtagctctcactgaagacattagctccaagccctctgaagaacattgtctct 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaccagctgtagctctcactgaagacattagctccaagccctctgaagaacattgtctct 564

                                                                       
Query: 364 ttgattcctgttggatatacatttcttagtttgcttttttgtttgttggttcgtttgatg 423
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 565 ttgattcctgttggatatacatttcttagtttgcttttt-gtttgttggttcgtttgatg 623

                                                                       
Query: 424 gtgtagttttgtttggttttgttcttccctttcttcaaagactatttcnatgcaatttat 483
           || |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 624 gtttagttttgtttggttttgttcttccctttcttcagagactatttcaatgcaatttat 683

                           
Query: 484 aaggatgtatcaaggc 499
           ||||||||||||||||
Sbjct: 684 aaggatgtatcaaggc 699


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 900
Length adjustment: 10
Effective length of query: 489
Effective length of database: 890
Effective search space:   435210
Effective search space used:   435210
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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