Query= MSMg01no301_p17.b1 MSMg01no301_p17.b1 CHROMAT_FILE:
MSMg01no301_p17.b1 PHD_FILE: MSMg01no301_p17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:30 2005
(320 letters)
>mm_chr8_54239253_54239972
Length = 720
Score = 574 bits (297), Expect = e-168
Identities = 305/309 (98%), Gaps = 3/309 (0%)
Strand = Plus / Plus
Query: 5 gaattcagaaaacctcaggaagacagagtggagaaaaataaaatcaagggaaaatgaatt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagaaaacctcaggaagacagagtggagaaaaataaaatcaagggaaaatgaatt 264
Query: 65 ttatttcattttcatggcagagtcctggaaccttaagcaaatttcagtttatttaaaaat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttatttcattttcatggcagagtcctggaaccttaagcaaatttcagtttatttaaaaat 324
Query: 125 atttaaatatttttataaacagtttttataaacatgttggaaaacccaatgtctttgtga 184
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atttaa---tttttataaacagtttttataaacatgttggaaaacccaatgtctttgtga 381
Query: 185 aatggaaaatattctgccctttttataggagaatgagaacactgatgtcaatatgggcca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aatggaaaatattctgccctttttataggagaatgagaacactgatgtcaatatgggcca 441
Query: 245 gttttaggtgctatttcaatcatgactcccacttagcaaagttagttttgaaagcaaact 304
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gttttaagtgctatttcaatcatgactcccacttagcaaagttagttttgaaagcaaact 501
Query: 305 ctttaaaat 313
|||||||||
Sbjct: 502 ctttaaaat 510
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space: 221121
Effective search space used: 221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no301_p17.g1 MSMg01no301_p17.g1 CHROMAT_FILE:
MSMg01no301_p17.g1 PHD_FILE: MSMg01no301_p17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:30 2005
(622 letters)
>mm_chr8_54388200_54389221
Length = 1022
Score = 223 bits (115), Expect = 4e-62
Identities = 127/131 (96%)
Strand = Plus / Minus
Query: 1 attttcttcggtagtaagattggttttatgacaagtaatctaaaacaggaaaatcccata 60
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 attttctttggtagtaagattggttttatgacaagtaatctaaaacaggaaaatcccatg 272
Query: 61 cccaaatgttctattgatcctagtttctacaattaaacatgcaggtacaaatgtagaggg 120
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 271 cccaaatgttctattgatcctagtttctacaattaaacatgcaagtacaaatgtagagga 212
Query: 121 tgatcaagagt 131
|||||||||||
Sbjct: 211 tgatcaagagt 201
Score = 136 bits (70), Expect = 7e-36
Identities = 76/78 (97%)
Strand = Plus / Minus
Query: 545 ctttgtaaagccaacaaatacaagcgatattaaaagccaaactctttttcaaaacattca 604
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 197 ctttgtaaagccaacaaataccagcaatattaaaagccaaactctttttcaaaacattca 138
Query: 605 ttgtgaaacctgatgaat 622
||||||||||||||||||
Sbjct: 137 ttgtgaaacctgatgaat 120
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space: 619344
Effective search space used: 619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
