BAC Information

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BAC

Clone NameMSMg01-302C16
Chromosome8 (Build37)
Map Location 110,345,020 - 110,345,306
singlet/doubletsinglet
Overlap geneLOC100041744
Upstream geneTmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b, LOC100042791, Nfat5, Nqo1, Nob1, Wwp2, LOC100042812, Psmd7, LOC668038
Downstream geneAtbf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302C16.T7 (MSMg01no302_c16.b1)MSMg01-302C16.TJ (MSMg01no302_c16.g1)
ACCAG428146AG428147
length719725
length of high quality
(start - end)
321 (46 - 366)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no302_c16.b1 PHD_FILE: MSMg01no302_c16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:44 2005CHROMAT_FILE: MSMg01no302_c16.g1 PHD_FILE: MSMg01no302_c16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTT
TCTGGAGCCCACCTTCTTGTAGTTCCTTATATATATTGGATATTAGTCCC
CTATCTGATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCT
TTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAACTTTA
TGAGGTCCCATTTGTTGATTCTCTATCTTACAGCACAAGCCATTGCTGTT
CTATTCAGGAATTTTCCCCCTGTACCCTTATCTTCGAGGCTTTTCCCCAC
TTTCTCCTCTATTATTTTCATTGCCCCCGCCCCCACGTGGAGTTCTTTAA
TCCACTTAGATTTGACCTTACCACAAGGAGATAAGAATGGATCAATTCGC
ATTCTTCCACATGATAACCGCCAATTGTGCCAGCACCATTTGTTGAAAAT
GCTGTCTTTTTTCCACTGGTTGGTTTTAGCTCTCAAGGTATCTTGTCTAT
ATCTTTATCTACATATCTATATATTTAAAGTCAGGGTTCTTGCCCGGTGG
TAGCAGTGGTACACACTTTTAATCCCAGCTATCTGGAGGTACAGACAGGA
GGATCTCTGTGAGTTCAAGGCCAGCTTGGTTTACAGAGTTCTAGGATAGC
TAGGCCTATACAGAGAAAC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATACATAGACTCTCTGGCTCCAAC
ATCATTCTTCAACAGAGGAGTTCATCAAACCCTCCTGCCTGGCCTGTAAC
TAGATGCGCACATTTCTGTGTTGCCCGTCTGTTTTGAGCTTTCCTGGGGT
GCGAAGCCTGTCAGATCACTGGAGCCAGCAATATCTTCATCCTGGAGGAG
AAAACGTGGGATACCAGTGCAACCTCTTGGCACACCAATTGCAGAAGAAA
CAAAACTGAAGTCCTCCACAGACTTCTCTAAAGCCTCTTGTCAGGGAAGT
CCTGTCCCACCCCTTAATTCCCTCCCCCAGCCCACCCTGCTCCCACAGAG
TAGAATCTCCAAGGCTGCTAGGATGTGACAAAAAAAAAGATTCTAAGTGT
GAAGTGATGTTTCCTATTACCATTTGACTTTCTCGGGGAGAAAGTTTTGG
CTGTAGGATACCTTTCTGCTTGGGTTTTTTCACTGTGACAGCATCCGGGG
TTATCAAAGTCTGGAAGGGCACAAAATTATAAAGAAAGAATGGAAGGAAG
GAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAGAATGATAGAAAGAATGAA
ATAACGAATGAATGAACTATAGAATGAAAGAACGATAGAATGAATGAATG
AAAGACTGAACGACAGAACGAATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_c16.g1 MSMg01no302_c16.g1 CHROMAT_FILE:
MSMg01no302_c16.g1 PHD_FILE: MSMg01no302_c16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:44 2005
         (288 letters)



>mm_chr8_110344820_110345507
          Length = 688

 Score =  532 bits (275), Expect = e-155
 Identities = 284/287 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atacatagactctctggctccaacatcattcttcaacagaggagttcatcaaaccctcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 atacatagactctctggctccaacatcattcttcaacagaggagttcatcaaaccctcct 428

                                                                       
Query: 61  gcctggcctgtaactagatgcgcacatttctgtgttgcccgtctgttttgagctttcctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gcctggcctgtaactagatgcgcacatttctgtgttgcccgtctgttttgagctttcctg 368

                                                                       
Query: 121 gggtgcgaagcctgtcagatcactggagccagcaatatcttcatcctggaggagaaaacg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gggtgcgaagcctgtcagatcactggagccagcaatatcttcatcctggaggagaaaacg 308

                                                                       
Query: 181 tgggataccagtgcaacctcttggcacaccaattgcagaagaaacaaaactgaagtcctc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 307 tgggataccagtgcaacctcttggcacaccaattgcagaagaaacaaaaccgaagtcctc 248

                                                          
Query: 241 cacagacttctctaaagcctcttgtcagggaagtcctgtcccacccc 287
           |||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 247 cacagacttcacgaaagcctcttgtcagggaagtcctgtcccacccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)