BAC Information

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BAC

Clone NameMSMg01-302I14
Chromosome8 (Build37)
Map Location 73,992,668 - 74,162,615
singlet/doubletdoublet
Overlap gene1500034J01Rik, Tmem16h, Gtpbp3, Plvap, LOC665928, Bst2, 1110012M11Rik, BC033932, Txnl6, Slc27a1, Pgls, Bcnp1, Glt25d1, Unc13a
Upstream geneKlhl26, Tmem59l, Crlf1, 2810428I15Rik, Uba52, Fkbp8, Ell, Isyna1, Ssbp4, Lrrc25, Gdf15, Pgpep1, Lsm4, Jund1, 2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1, Arrdc2, Kcnn1, LOC100042011, Ccdc124, Slc5a5, Rpl18a, Snora68, Mtap1s, LOC100042057, LOC665858, LOC384645, LOC100041583, EG621377, 2410004L22Rik, Myo9b, 2010315L10Rik, Ocel1, Nr2f6, Ushbp1, 5430437P03Rik, Ankrd41, Abhd8, Mrpl34
Downstream geneJak3, Insl3, B3gnt3, LOC100042289, Fcho1, EG665991, LOC665996, LOC385024, LOC675190, Zfp709, LOC670453, Zfp617, BC049349, Cyp4f18, LOC666033, Olfr372, Olfr373, Olfr374, Tpm4, Rab8a, Hsh2d, Cib3, 2510049I19Rik, Ap1m1, LOC384840, LOC100042405, Klf2, Eps15l1, Calr3, LOC100042421, 1700030K09Rik, Cherp, Slc35e1, Crsp7, LOC100042439, 9130011J15Rik, Tmem38a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302I14.T7 (MSMg01no302_i14.b1)MSMg01-302I14.TJ (MSMg01no302_i14.g1)
ACCAG428398AG428399
length729744
length of high quality
(start - end)
321 (47 - 367)285 (76 - 360)
definitionCHROMAT_FILE: MSMg01no302_i14.b1 PHD_FILE: MSMg01no302_i14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:12 2005CHROMAT_FILE: MSMg01no302_i14.g1 PHD_FILE: MSMg01no302_i14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,162,302 - 74,162,615)(73,992,668 - 73,992,951)
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCATGCCAGTGCTTTCTGAGCTACCAGAGTGAAAGGGAGCAATCA
CGGTATCCAAACGTTTGCCTTGTGCCCCACAGACCCCTCAGTAAAACCAT
CCCCTCCAACAATTCTCTATGGGTCAGGCGAGGCCACCATGACATTTTAC
TTTGTCCCAAACTCACCTTCCCAGAGGACGCAGCATGGCATCATGCCCAG
TGCCCAGGTTGTAGTTGTAGGCAAACCGTAAAGGAAAACAAGACACTGAC
AGCTTGTGACAAGCCAGTGCCTGTCACAGCTTACCTTCATGACAGCCCTC
TGAGGGAAGTCTCATTATTTTCAATCCACCGCCAAAAGCCAAGGCTGGGA
GGGAGAGCAGCCTTCTGGCTCACGCCATAAATTAATGATGGCGTCAGTTT
GGATCTGTCTCAGTGCAGACCGGGGATGCTTCTGTTAATCTGGGATCCAG
CAGGTTTCTTTGTACACCAAATGTAAATGGCTTGTATTTTGACAGTGGCG
TTTACCTTGTGCTCTTGCTGGCTCTGGCCCTGGCACTCTTCTCCTCCTCT
TTCTCCCCATCCCCTTCCCTCACCTTTCATCTCCCTTCCCATCCTTCCTC
TCCCTCCTCTTCCTGGATTTCTCCCACCCCCCCATGTCTGTCTCTCCCTT
CTCTTCCCTCTTCCCATCATCCCTCCTCN
AATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXGGTGGCTGAGGCAGGAGGATTGCTG
CATGTTTAAAGTCAGCCTGTACTATGAGACCTCAAAAAAATGAACTGTAG
GTTGAGATCCAGCATAGGAGGCTGTGAGTTGGATGAACTCATTACAATGA
GCCTTCCAGGGACATCATAGAAAAGGTGGAGCAGCTCCTAGAAGGAGCAG
AGCCCTGCCGCATCGCTGGCGACCTGTGAACTACAACTCCCAGGACGCAT
CGCGCGGGTCGCCACCCACGTCTGTATCTCAAGTTCTTACTTCCCAAGCC
CCGGGCGGGTTTTGTTTCTTCCNAGCCATNGCCGACGAAGGTGGAGATGC
AGAGACCAATTATATCGCCAACAAAAAAAAAAAAAACAGTGGGAGGGCGG
CGGGCGCGGTCGCCGTGAATGTCGGGGTCACCACGCGGTCCAATGACGCG
CGGTGCTGTCGCCATCGGAGTGAGCTGCGCGGCGGCTGGAATTGGTTGTG
TCGCGTCTACTGGTAAGGAGGCTGCGGCTGTGGCGGTTGCCGGTGTCGGT
CTCTGGTCCTGTTGGCATAATACTTGGTACGAGGGCGAGCGTTTGCCATG
TGGCCTTCCCTTAACTGCTCTTTCATGGACGCCTTGGGTGCCCCCCCTAG
GTCCCCTGAAGAGGCTCCCCTGTCCTATGCCCCTTCACCATCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_i14.b1 MSMg01no302_i14.b1 CHROMAT_FILE:
MSMg01no302_i14.b1 PHD_FILE: MSMg01no302_i14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:12 2005
         (321 letters)



>mm_chr8_74162098_74162818
          Length = 721

 Score =  576 bits (298), Expect = e-169
 Identities = 310/314 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatgccagtgctttctgagctaccagagtgaaagggagcaatcacggtatccaa 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gaattccatgccagggctttctgagctaccagagtgaaagggagcaatcacggtatccaa 459

                                                                       
Query: 65  acgtttgccttgtgccccacagacccctcagtaaaaccatcccctccaacaattctctat 124
           |||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 acgtttgcccagtgacccacagacccctcagtaaaaccatcccctccaacaattctctat 399

                                                                       
Query: 125 gggtcaggcgaggccaccatgacattttactttgtcccaaactcaccttcccagaggacg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gggtcaggcgaggccaccatgacattttactttgtcccaaactcaccttcccagaggacg 339

                                                                       
Query: 185 cagcatggcatcatgcccagtgcccaggttgtagttgtaggcaaaccgtaaaggaaaaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 cagcatggcatcatgcccagtgcccaggttgtagttgtaggcaaaccgtaaaggaaaaca 279

                                                                       
Query: 245 agacactgacagcttgtgacaagccagtgcctgtcacagcttaccttcatgacagccctc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 agacactgacagcttgtgacaagccagtgcctgtcacagcttaccttcatgacagccctc 219

                         
Query: 305 tgagggaagtctca 318
           ||||||||||||||
Sbjct: 218 tgagggaagtctca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no302_i14.g1 MSMg01no302_i14.g1 CHROMAT_FILE:
MSMg01no302_i14.g1 PHD_FILE: MSMg01no302_i14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:12 2005
         (285 letters)



>mm_chr8_73992468_73993152
          Length = 685

 Score =  534 bits (276), Expect = e-156
 Identities = 282/284 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggtggctgaggcaggaggattgctgcatgtttaaagtcagcctgtactatgagacctcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggtggctgaggcaggaggattgctgcatgtttaaagtcagcctgtactatgagacctcaa 260

                                                                       
Query: 61  aaaaatgaactgtaggttgagatccagcataggaggctgtgagttggatgaactcattac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaatgaactgtaggttgagatccagcataggaggctgtgagttggatgaactcattac 320

                                                                       
Query: 121 aatgagccttccagggacatcatagaaaaggtggagcagctcctagaaggagcagagccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatgagccttccagggacatcatagaaaaggtggagcagctcctagaaggagcagagccc 380

                                                                       
Query: 181 tgccgcatcgctggcgacctgtgaactacaactcccaggacgcatcgcgcgggtcgccac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgccgcatcgctggcgacctgtgaactacaactcccaggacgcatcgcgcgggtcgccac 440

                                                       
Query: 241 ccacgtctgtatctcaagttcttacttcccaagccccgggcggg 284
           ||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 441 ccacgtccggatctcaagttcttacttcccaagccccgggcggg 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)