TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGCAGATTACCCTAAGGTAACAACATTAAGGCAAATGGGAAGACA
GTGGAGGCACAAATAACATAGATTTTTTTGAACTTCCTGAATTATAAAGG
AATGACAAAGAAACAACAAAGCAAAAATAAAACAAAATCAATATTTTTAG
CTGATTTAGAAGACAGGACAGTCGGGCAGTGGTAGTGCACTCCTTTAATC
CCGGCACTTGGGAGGCAGAGGCAGGAGGATTTTTGAGTTCGAGACTGGTC
TACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTC
GAAAAACAAACAAAAAAAAAATAGAGGACAGGACATCCCTACATCTCCAA
TGCACAGCAGTCAGGTCAGGGTTCAAGCACCAGCTGGTTACAGTGCTGCT
TGTCTCCTAGCATCCTTCAGGGAGGAGGTAGAGGGACCACAGCAGCTGGC
AGATCGGAAAATGGAGTTATCATGAAATATTCAACAGGTGAGATAGCACA
GGGGACAACTTTGAAGCAAGAGCTCCAAACTGGAAGGCACTCTGCAAAAC
ACCAAAACAAATGAAGAACAACAGAGGGCTCTTAAGGGCCAAAAGGTGTA
GTATACAAGATGAAGAAGACATAACCAGCAGACCTTGTTATACTAGACCA
AAAGGATGATGTAAAATACTCCTCAGGTTATGAGAGAACAACATCAT

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGAACTCTTCAGCTGGGGAACGGTGG
TAATAAAGTGTTCCCGCAACACAGACTGTTGAGAAGGATTCAACTGCATG
AATTCAGAACTCTTCAGCTGGGGAACAGGGGTACCAGTGAGTACAGCTTT
ACAAGGTAAGTCTGGTCTTGAACTTTCTAACGAAATTCAAGACAGTCTAT
CAGAAGTAAAGTGGGAAATAGCTTTACAAGGTACGCCTGGCCTTGAACTT
TCTAACGAAATTCAAGACAGTCTATCAGAAGTAAAGTGGGAAATAGCTTT
ACAAGGTATGTTTGGCCTTGAACTTTTTCTAGTGTTAGGAGCCTTTTTGT
TCTTTTTCACATGTTATCAAGTGATTAAGATAGGGCTGAAAATTCTGGAT
GAAATTCAGGGCAATCTATCAGAAGTAAAGCGGGGAGAGAGAGTAGGAGC
AAAGAGGAAATATGGTACACAAACTAAGTATACAGGCCTTTCCAAGGGTC
TTGAACCCGAGGAAAAGTTAAGGTCAGGTAAGAATACCTGGGGAGAGATT
AGAAGGAAGGAAAAGAAAAAAGAAAAGAAAAAAAATCAATTAGCGGAGGT
CTCTAGGAGAAGGAGCCTATACTCATCACTAGATGAGCTCAAGGAGCCAG
CTCTTAGTAGCTCTGAATCAGATGACGAATTCTCCTCTGAAGAACAGAN

Query= MSMg01no302_j06.b1 MSMg01no302_j06.b1 CHROMAT_FILE:
MSMg01no302_j06.b1 PHD_FILE: MSMg01no302_j06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:14 2005
         (702 letters)



>mm_chr8_71301089_71302190
          Length = 1102

 Score = 1307 bits (676), Expect = 0.0
 Identities = 693/704 (98%), Gaps = 11/704 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgcagattaccc----taaggtaacaacattaaggcaaatgggaagacagtgga 60
           |||||||||||||    |    ||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaattctgcagat----caaaataaggtaacaacattaaggcaaatgggaagacagtgga 257

                                                                       
Query: 61  ggcacaaataacatagatttttttgaacttcctgaattataaaggaatgacaaagaaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ggcacaaataacatagatttttttgaacttcctgaattataaaggaatgacaaagaaaca 317

                                                                       
Query: 121 acaaagcaaaaataaaacaaaatcaatatttttagctgatttagaagacaggacagtcgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 acaaagcaaaaataaaacaaaatcaatatttttagctgatttagaagacaggacagtcgg 377

                                                                       
Query: 181 gcagtggtagtgcactcctttaatcccggcacttgggaggcagaggcaggaggatttttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gcagtggtagtgcactcctttaatcccggcacttgggaggcagaggcaggaggatttttg 437

                                                                       
Query: 241 agttcgagactggtctacagagtgagttccaggacagccagggctacacagagaaaccct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 agttcgagactggtctacagagtgagttccaggacagccagggctacacagagaaaccct 497

                                                                       
Query: 301 gtctcgaaaaacaaacaaaaaaaaaa---tagaggacaggacatccctacatctccaatg 357
           ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||
Sbjct: 498 gtctcgaaaaacaaacaaaaaaaaaaaaatagaggacaggacatccctacatctccaatg 557

                                                                       
Query: 358 cacagcagtcaggtcagggttcaagcaccagctggttacagtgctgcttgtctcctagca 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 cacagcagtcaggtcagggttcaagcaccagctggttacagtgctgcttgtctcctagca 617

                                                                       
Query: 418 tccttcagggaggaggtagagggaccacagcagctggcagatcggaaaatggagttatca 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tccttcagggaggaggtagagggaccacagcagctggcagatcggaaaatggagttatca 677

                                                                       
Query: 478 tgaaatattcaacaggtgagatagcacaggggacaactttgaagcaagagctccaaactg 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tgaaatattcaacaggtgagatagcacaggggacaactttgaagcaagagctccaaactg 737

                                                                       
Query: 538 gaaggcactctgcaaaacaccaaaacaaatgaagaacaacagagggctcttaagggccaa 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 gaaggcactctgcaaaacaccaaaacaaatgaagaacaacagagggctcttaagggccaa 797

                                                                       
Query: 598 aaggtgtagtatacaagatgaagaagacataaccagcagaccttgttatactagaccaaa 657
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 aaggtgtagtatacaagatgaagaagacataaccagcagaccttgttatactagaccaaa 857

                                                       
Query: 658 aggatgatgtaaaatactcctcaggttatgagagaacaacatca 701
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 aggatgatgtaaaatactcctcaggttatgagagaacaacatca 901


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1102
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1092
Effective search space:   755664
Effective search space used:   755664
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)