Query= MSMg01no304_a12.b1 MSMg01no304_a12.b1 CHROMAT_FILE:
MSMg01no304_a12.b1 PHD_FILE: MSMg01no304_a12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:07 2005
(793 letters)
>mm_chr8_68692057_68693249
Length = 1193
Score = 1487 bits (769), Expect = 0.0
Identities = 787/793 (99%)
Strand = Plus / Minus
Query: 1 aactcagaaatccacctgcctctgcctcccgagccctgggattaaaggcatgtgccacca 60
||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 1062 aactcagaaatccacctgcctctgcctcccgagtgctgggattaaaggcatgcgccacca 1003
Query: 61 cgcccggctgggatccacttataaatgaatacagttcctttatttaatttctatatggaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1002 cgcccggctgggatccacttataaatgaatacagttcctttatttaatttctatatggaa 943
Query: 121 ggttctaaatatgaagcactttcatcaaaagtaaacacatatgctaactaaacttattaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 942 ggttctaaatatgaagcactttcatcaaaagtaaacacatatgctaactaaacttattaa 883
Query: 181 aaacagcttgttctctagaggccaataagtaacacagttgaaaatatacttactatagca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882 aaacagcttgttctctagaggccaataagtaacacagttgaaaatatacttactatagca 823
Query: 241 taagtacatgtatgtagccacattttacatagaataatgcaagtttgctatggaatagaa 300
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 822 taagtacatgtatgtagccacattttacatagaataatgaaagtttgctatggaatagaa 763
Query: 301 atcacaacagattcaaagtctgaaagcacaggatctgtttatgtgaaaaatacatgtgac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 atcacaacagattcaaagtctgaaagcacaggatctgtttatgtgaaaaatacatgtgac 703
Query: 361 ttggcataactgctttattttctgtgacgtcttcttatgtctcaaatcctgttattacaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 ttggcataactgctttattttctgtgacgtcttcttatgtctcaaatcctgttattacaa 643
Query: 421 cctgatatcgatattattgcatgaattaaattgtcttataattttataatagcatgaact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 cctgatatcgatattattgcatgaattaaattgtcttataattttataatagcatgaact 583
Query: 481 gacatgtcattttagaaatgtattattcattgtatacaattcagacaatttatacaaact 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 gacatgtcattttagaaatgtattattcattgtatacaattcagacaatttatacaaact 523
Query: 541 gaaggtcttttcccattgttgtttgaaataagcgtaagtgtgtttatgttaacatcaatt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gaaggtcttttcccattgttgtttgaaataagcgtaagtgtgtttatgttaacatcaatt 463
Query: 601 ttattttcaaaattaggacagaaagagaattcctaacttgatacagatttataagaacaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ttattttcaaaattaggacagaaagagaattcctaacttgatacagatttataagaacaa 403
Query: 661 aaaatgtctttggcttatttttttccagaatgtaaagtgacaatgagaacacgagtaagg 720
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 402 aaaatgtctttggcttatttttttccagaatgtaaagtggcaatgagaacacgagtaagg 343
Query: 721 aaagaacaattgacgtttaccttaaataagtttaggaatttactcttattattacatgtc 780
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 aaagaacaattgacatttaccttaaataagtttaggaatttactcttattattacatgtc 283
Query: 781 tatacattatagt 793
|||||||||||||
Sbjct: 282 tatacattatagt 270
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 793
Length of database: 1193
Length adjustment: 10
Effective length of query: 783
Effective length of database: 1183
Effective search space: 926289
Effective search space used: 926289
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no304_a12.g1 MSMg01no304_a12.g1 CHROMAT_FILE:
MSMg01no304_a12.g1 PHD_FILE: MSMg01no304_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:08 2005
(558 letters)
>mm_chr8_68535778_68536736
Length = 959
Score = 965 bits (499), Expect = 0.0
Identities = 541/555 (97%), Gaps = 3/555 (0%)
Strand = Plus / Plus
Query: 5 ttcattgtatactcatatgtatttagccatgcccatgcgatccactattttacagtatct 64
|||| |||||||||||||||||||||||||||||||| || |||||||||||||||| ||
Sbjct: 205 ttcactgtatactcatatgtatttagccatgcccatgagagccactattttacagtacct 264
Query: 65 aaaaacggaggctcctggttttgttttaattgatagtatccttaaatcaagccatatagt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaaaacggaggctcctggttttgttttaattgatagtatccttaaatcaagccatatagt 324
Query: 125 ttgaaacttagatgagaaaaaa-tgggtgcatatatgaagttcatataaacaagaa-aag 182
|||||| ||||||||||||||| |||||||||||||||||||||||||||| |||| ||
Sbjct: 325 ttgaaaattagatgagaaaaaaatgggtgcatatatgaagttcatataaacgagaacaa- 383
Query: 183 tatggaaaccaaaccagggttagggctgtggggatatagggtacattttggaaagatata 242
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 384 tatggaaaccaaaccagggttagggctgtggggatatagggtaaattttggaaagatata 443
Query: 243 tgagggagtgattcaaacatccagtaagaagctctgcataattgatatgtatctatatca 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgagggagtgattcaaacatccagtaagaagctctgcataattgatatgtatctatatca 503
Query: 303 acacacaaaataatttaggtgagaggaagaatattttgtggctagctctagccatataac 362
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 acacagaaaataatttaggcgagaggaagaatattttgtggctagctctagccatataac 563
Query: 363 aaaacccttccccaataaatcaaaacaaaaataaataattttgaaagtccaataagggca 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aaaacccttccccaataaatcaaaacaaaaataaataattttgaaagtccaataagggca 623
Query: 423 aattgagcttggaattgatagaatactgaacatgaaaacttcaaaaaagctaaccattca 482
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 624 aattgagcttggaattgatagaatacaaaacatgaaaacttcaaaaaagctaaccattca 683
Query: 483 aacccctttaaggtaatgtccctcaacataaaatgtacataaatgtacttcaggatgctg 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aacccctttaaggtaatgtccctcaacataaaatgtacataaatgtacttcaggatgctg 743
Query: 543 agagaaaataatgag 557
|||||||||||||||
Sbjct: 744 agagaaaataatgag 758
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 959
Length adjustment: 10
Effective length of query: 548
Effective length of database: 949
Effective search space: 520052
Effective search space used: 520052
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
