BAC Information

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BAC

Clone NameMSMg01-304G08
Chromosome8 (Build37)
Map Location 115,189,231 - 115,189,818
singlet/doubletsinglet
Overlap geneCntnap4
Upstream geneZfp1, Ctrb1, Bcar1, Cfdp1, Tmem170, Chst5, 4932417I16Rik, Gabarapl2, Adat1, Kars, Terf2ip, EG627828, LOC672498, LOC100042040
Downstream geneLOC100042061, Mon1b, 4930481F22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304G08.T7 (MSMg01no304_g08.b1)MSMg01-304G08.TJ (MSMg01no304_g08.g1)
ACCAG429691
length1,4041,388
length of high quality
(start - end)
---660 (136 - 795)
definitionCHROMAT_FILE: MSMg01no304_g08.b1 PHD_FILE: MSMg01no304_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:42:58 2005CHROMAT_FILE: MSMg01no304_g08.g1 PHD_FILE: MSMg01no304_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:42:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCCGATAANNNNNNNNCCAATGGGCGCTNACGACTCCTATXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGCCCCC
ATTATTATTACACCCGAACTAAGGGGAACTGGCTCCCTCCAAAATCCCCC
ACCAATCATGGGGCCTGGTCCCCCTTATTCAAAATCAACCGGGGAACTGG
GCCCTTTTATTTATCCAAAATATGGAAGGGGTCCATATTCTACCCAATAT
TTAACTTTCCCTTCTTTAATATTATATTATCTCCTAAAAAGCTNATCTCT
CTTACTATACGATCCAAATGTATGAGTGACTTGTTCTTCTTTACCACTTC
ANCTTTATATTATCTTAAATAACATNNNTNNTTCGGTTGTATGTTTCTTT
TTTG
NNCCCCAATTCCTTNNNNNNATGCATGGAGCCXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTAATGTATCTATA
TCAAGCAAAGTTCCTTTAGCTTCCCCTATCAAGGTGATATGCAGGCATAG
AAAAAACAAAAAAACAAACAAACAAACAAAAAACAAAAAAAACAACAACA
AAAAAACCCAACAAAAAAAAATGACTTCACTTCATCACAACCTGCCTCTG
TCCTGCTCTCTGTCTTATAGAGCTGCCAAAATACTCCATCAACACACTCT
TTCATGGTGTGTGTATGTGTGTATGCAAGTGATATGTGCAACACTGTAAA
TCATGCATATATATACATACATATATACATATATATATATATATACACAT
ATACATACACACACACACAATTTTATAACTTCAGACATAGCTCTCTACAT
TACAGCATCTCTCTACATTCAAGAGAAAAAGTCCTCAAAATCTCAGTCAC
CAGACCAAATAAAAAAAATACTTTTGAATGGTTTCAAAGACAATATAAAA
GTTCCATGTTATCTTACAAACATAAATTTTTATACAAGTCTAGCTTCTTG
TGTTTCCACACGGTTTAGTGGACTCGTGTGGGACCTCTTTTACCTTCTCA
GGAATTTGCTCTCAATATTTTCATAGATTTAGCCATGAATAGCTTCCCTT
AAGAGATGGTATCAGGGTCACCCTGAGTGTTCGGTGGCCACTTTATATAA
GAGACTGATGTCAAGCCCCAGGAATGGAGGTGCTTGCCATCCCAGGAGCC
CGTGTCTTTAAGGAAGGAAACATACCCAGATGCTGTCTTCTTGTCTATAC
TGCTTCCAGTCCTTCCACTAATACTGAAAATCANGAGATAGCTGGTCCCC
CATTGGAGATCCCATACCCCCTTGGGGGGCCCGGAAGTGAATTCATCTCC
TCTCCAAGGTAAACTGGACCCCTGGTATTGTTGGAAACAATGGGGAACAC
CCACCCTCCCTTTACTAAAATAAAAAAAAAAAAATTGGGAAGGAAGCATT
ATTATTCTCCAACTAAGGGAATGGCTAAAACGGAAGGAATAAAAAAATTC
CCATATAAACCTTCTTTATTTCTATAGTATTCCCAAAGGATAAAGAATAC
GTGGCTCTCGTCTTTATACTTTAACTACTTCTTCGAAAAATTATGCAATA
ATTTAATTTTTGANGAAAACTCCTTATAAATATAATATAACACGAACTCC
TTTTCTGTTCTCTAATCATATAATACACTTAGACGATAATTGCATAATAT
TTCTGCAACTNNTNCNTCTTTCNNTGTAAGNGGNCATACNNNCCCCCCNC
NNNGCCACACCTAAATCTAAGCTCATAAGACTTNTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_g08.g1 MSMg01no304_g08.g1 CHROMAT_FILE:
MSMg01no304_g08.g1 PHD_FILE: MSMg01no304_g08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:59 2005
         (660 letters)



>mm_chr8_115188759_115189820
          Length = 1062

 Score = 1002 bits (518), Expect = 0.0
 Identities = 574/596 (96%), Gaps = 10/596 (1%)
 Strand = Plus / Minus

                                                                        
Query: 67   aaaaacccaacaaaaaaaaatgacttcacttcatcacaacctgcctctgtcctgctctct 126
            |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1060 aaaaacccaac--caaaaaatgacttcacttcatcacaacctgcctctgtcctgctctct 1003

                                                                        
Query: 127  gtcttatagagctgccaaaatactccatcaacacactctttcatggtgtgtgtatgtgtg 186
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1002 gtcttatagagctgccaaaatactccatcaacacactctttcatggtgtgtgtatgtgtg 943

                                                                        
Query: 187  tatgcaagtgatatgtgcaacactgtaaatcatgcatatatatacatacatatatacata 246
            |||||||||||||| ||||||||||||||||| ||||||||||||||  ||||||  |||
Sbjct: 942  tatgcaagtgatatatgcaacactgtaaatcacgcatatatatacat--atatat--ata 887

                                                                        
Query: 247  tatatatatatatacacatatacatacacacacacacaattttataacttcagacatagc 306
            || ||||||||||  |||||||||| |||||||||||||   ||||||||||||||||||
Sbjct: 886  tacatatatatat--acatatacatgcacacacacacaaccctataacttcagacatagc 829

                                                                        
Query: 307  tctctacattacagcatctctctacattcaagagaaaaagtcctcaaaatctcagtcacc 366
            ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 828  tctctacattacagcgtctctctacattcaagagaaaaagtcctcgaaatctcagtcacc 769

                                                                        
Query: 367  agaccaaat--aaaaaaaatacttttgaatggtttcaaagacaatataaaagttccatgt 424
            |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768  agaccaaattaaaaaaaaatacttttgaatggtttcaaagacaatataaaagttccatgt 709

                                                                        
Query: 425  tatcttacaaacataaatttttatacaagtctagcttcttgtgtttccacacggtttagt 484
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 708  tatcttacaaacataaatttttatacaagtctagcttcttgtgtttccacatggtttagt 649

                                                                        
Query: 485  ggactcgtgtgggacctcttttaccttctcaggaatttgctctcaatattttcatagatt 544
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648  ggactcgtgtgggacctcttttaccttctcaggaatttgctctcaatattttcatagatt 589

                                                                        
Query: 545  tagccatgaatagcttcccttaagagatggtatcagggtcaccctgagtgttcggtggcc 604
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 588  tagccatgaatagcttcccttaagagatggtatcagggtcaccctgagtgtttggtggcc 529

                                                                    
Query: 605  actttatataagagactgatgtcaagccccaggaatggaggtgcttgccatcccag 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528  actttatataagagactgatgtcaagccccaggaatggaggtgcttgccatcccag 473


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1062
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1052
Effective search space:   683800
Effective search space used:   683800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)