Query= MSMg01no304_m05.b1 MSMg01no304_m05.b1 CHROMAT_FILE:
MSMg01no304_m05.b1 PHD_FILE: MSMg01no304_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:50 2005
(731 letters)
>mm_chr8_110875821_110876953
Length = 1133
Score = 1390 bits (719), Expect = 0.0
Identities = 729/733 (99%), Gaps = 2/733 (0%)
Strand = Plus / Plus
Query: 1 ggaccatcaaaggggcaggtggcagatttcaaacgatgctgagaagttgatttgcaagac 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 ggaccatcaaaggggcaggtggcagatttcaaaagatgctgagaagttgatttgcaagac 260
Query: 61 cagtgagacccaaccccagtgatggggtgacctaaggcagaggccatgattctgctacag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagtgagacccaaccccagtgatggggtgacctaaggcagaggccatgattctgctacag 320
Query: 121 gagacaaggaccagagcctgggaaatatgacccatgaccatggcttaatcttagtaatcg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagacaaggaccagagcctgggaaatatgacccatgaccatggcttaatcttagtaatcg 380
Query: 181 ctacccagagtatggttgcccttcacgggacgtttgattctggaatggcaaaacaagaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctacccagagtatggttgcccttcacgggacgtttgattctggaatggcaaaacaagaca 440
Query: 241 aaagggtactactggccactggtggtagagaacacagacacttctctgtttaggacagtc 300
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 aaagggtactactggccactggtggtagagaacacagacacttctctgtgtaggacagtc 500
Query: 301 tcaagatttagaattggttgattcatctatcaagagtacaaaaattaccaagagtacaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcaagatttagaattggttgattcatctatcaagagtacaaaaattaccaagagtacaga 560
Query: 361 aaaaaaaaaaa--ctctaccttctttgaatcaattcttcatgtccactcatgtgacagac 418
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaaaaaaaaaaactctaccttctttgaatcaattcttcatgtccactcatgtgacagac 620
Query: 419 tctccttggataccacgttgtattggttggttagtcaacttggtacaaactagggtcatc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctccttggataccacgttgtattggttggttagtcaacttggtacaaactagggtcatc 680
Query: 479 ttggaagaggaaacctcaaccaagaaaatgccaccataaaatttgctacctcagcatgta 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttggaagaggaaacctcaaccaagaaaatgccaccataaaatttgctacctcagcatgta 740
Query: 539 ggcaaatctgaagggacattttcttgattaattattggtgtggaaggacccagcccactg 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggcaaatctgaagggacattttcttgattaattattggtgtggaaggacccagcccactg 800
Query: 599 tgggcagtaccacttctaggctagtggtcctgagttgtatgagaaagcagactgagcaaa 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgggcagtaccacttctaggctagtggtcctgagttgtatgagaaagcagactgagcaaa 860
Query: 659 ccatgggaagcaagccagtaaactgcattctctcatgttctccactccattccctgcctc 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 ccatgggaagcaagccagtaaactgcattctctcatgttctccactccattccctgcctc 920
Query: 719 cagaaccctgcct 731
|||||||||||||
Sbjct: 921 cagaaccctgcct 933
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 731
Length of database: 1133
Length adjustment: 10
Effective length of query: 721
Effective length of database: 1123
Effective search space: 809683
Effective search space used: 809683
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no304_m05.g1 MSMg01no304_m05.g1 CHROMAT_FILE:
MSMg01no304_m05.g1 PHD_FILE: MSMg01no304_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:50 2005
(692 letters)
>mm_chr8_111028637_111029727
Length = 1091
Score = 959 bits (496), Expect = 0.0
Identities = 535/548 (97%), Gaps = 1/548 (0%)
Strand = Plus / Minus
Query: 1 cctagaagtggatcattttaactctaaaatgacatgatgttttaaaatgcaaaaagctaa 60
|||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||
Sbjct: 547 cctagaagtggatcattttaactctaaaatgaaaagatgttttaaaatgtaaaaagctaa 488
Query: 61 atgaattagcatactttgttcactgcccttggttattagaattccctctaggttccgttt 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 487 atgaattagcatactttgttcactgcccttggttattagaattccctttaggttccgttt 428
Query: 121 tagtacttttagagatatttaatagccagtttataaatacccaaagagaacctcattttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 427 tagtacttttagagatatttaatagccagtttataaatacccaaagagaacctca-tttt 369
Query: 181 ttctcttagccttcaaaaaaagtttaggcaggtatatgttgacagttaactttctttctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ttctcttagccttcaaaaaaagtttaggcaggtatatgttgacagttaactttctttctc 309
Query: 241 atgtcttttttagtcctctgatcttttgcctcttatctctctttgcaactgataaatctg 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 atgtcttttttggtcctctgatcttttgcctcttatctctctttgcaactgataaatctg 249
Query: 301 cagttcattaaatcttcatttagctctttatttcttctggtgtgtacatatgtgtgtgcc 360
||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 248 cagttcattaagtcttcatttagctctttatttcttccgatgtgtacatatgtgtgtgcc 189
Query: 361 agtgtcccggtctgaagaggccaaggaggataacgggtgccctgctctttcatcctctgt 420
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 188 agtgtcccggtctgaagaggccaaggaggataacaggtgccctgctctttcatcctctgt 129
Query: 421 catttgccatggagatgggggtctctccctgaacctggagctagatcggcagccagtgag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 catttgccatggagatgggggtctctccctgaacctggagctagatcggcagccagtgag 69
Query: 481 ttctgtagactctgccctcccacaatgctttggttacagatacatgggtagccatgtctg 540
||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 68 ttctgtagactctgccctcatacaatgctttggttacaggtacatgggtagccatgtctg 9
Query: 541 gctttgta 548
||||||||
Sbjct: 8 gctttgta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1091
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1081
Effective search space: 737242
Effective search space used: 737242
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
