BAC Information

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BAC

Clone NameMSMg01-305N05
Chromosome8 (Build37)
Map Location 89,379,825 - 89,380,177
singlet/doubletsinglet
Overlap geneBC004022
Upstream genePhkb, LOC671665, LOC100040165, Abcc12, Lonp2, Siah1a, ENSMUSG00000074178
Downstream geneLOC666960, EG625298, EG330819, Cbln1, LOC100040294, 4933402J07Rik, Zfp423
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-305N05.T7 (MSMg01no305_n05.b1)MSMg01-305N05.TJ (MSMg01no305_n05.g1)
ACCAG430670AG430671
length1,3221,303
length of high quality
(start - end)
365 (30 - 394)384 (73 - 456)
definitionCHROMAT_FILE: MSMg01no305_n05.b1 PHD_FILE: MSMg01no305_n05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:46:14 2005CHROMAT_FILE: MSMg01no305_n05.g1 PHD_FILE: MSMg01no305_n05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:46:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGCCCGCATGGGCGCTAAGACTCCTAAGGGAGAGGATCCGCGGAATTC
CTGTTCATGCCTCTGGAAACAATGACCTGGCTGTTTTTCCACCATAGCAG
CCAGTCAACATGTCTAAGGCAGAGGAGAGTTAGGTAACACTAGCTATAGC
AGTGATCATCACCCCAGGCAGGGCAGTGGCGGGGAATAGTGGAAAGCCCT
TTCTGAGTTAACCCGGACAGCATGACTTCCTTCTGGCTTCCACTTAGTAA
AAACTAGTTGTGGAACTGCTATAGAAAGACCAGCAACGCTGGGCATGGTG
GCGCATGCCTTTAATCTGAGCACTCAGGAGGCAGAAGCAGAGGCAGGCGG
ATTTCTGAGTTCAAGGCCAGCCTGGTCTACGAAGTGAGTTCCAGGACTTT
TTGGACTATACAGAGAAACCCTGTCTCGAAAAAAAAGAAAAAAAAAAATT
TTTTTTTTCCCCCCCCCCAGNGGANAGAATGTCCCCTTAAAAAAAGGGGG
GGGGCNAACCCCATCTACACGGAAAATCACCAAAGCAACAAGTCAGGTGC
TCTCAGGGTGGGGTTTCAGACGCCTCTGTGATGTCGAGCCAGACACCGCA
AACATGTCCACTGACTCACGACTGACTCATTCATGGTGACAAGGGGGAAA
TGAACCAAAAACCTACAGAGTCAGCAGCATAAGGCAGGTGTTTTGGAATT
TCTCATCATATACATGAGCTGCAGACATCATGTCAGACAAAGAAACAGCA
ACCCAGGGCAGACGGGGGAGTTCCCACCAGGATACCCTGCTCCTGGGGGC
CTCAGATTTCCTTCTTCATTTAGACAGCAAATGGGTGAGGGTCCCTCCTA
AGAAGTTTTGCATCCCATGTTGATAAGGTCTGAACATTCTAATTTTTACT
TTCGGGAAAATGCAAAAGGGCCCAGTGCTGAAGAAAGAATTTTTGGCCCC
CAGTTCTAGGGGTGACTCCGGTTAGGTCATGAAAATGGAACCCAATTTTT
TGCTTCCAAAACTTGGATGGAAGATTTCCTCCCCCCCCTTTTATTAATAA
TAGTATTAATTACTTGAATAAATAGGTTCGATGATGATCCTCAAGGTTAA
AAATGAATTTTTAAAAACCAAAATTTTTCCTTAGTTGTTCTAAAAATCTA
AGTTTCATTCTCCACACTGGAGGGCAATAATCTTTTTTTAAAACACTTGG
ACCCTGTTGTCTATAACCTTAATTTACATATAACTAAAAAACTTCTGGGT
CCTTCTTAAGTAACCAATAGGAAATCTGTCCTCTATGCTGGGAATTTTCT
ACTAATTCTCTCCCATATTGGG
NNGGAGGTGAGCGTGAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTAGACCAGCCTGGGCCATATGCAGAGAC
TCGATTGAAATGAAAATTTCTGGTTCATGTGGGAACTCAGTTATGTCATA
TGATGTTTTTTGGAACAGGCAAGAGAAAGGATATTGAAGAGACACATGGA
AGAATATTTTGCTGAAGCAGACACATGAAAGGACATATGATTCTTACAAA
GAGCATAAATGACCCCCAGACAATGTGAGGAAGCTATCACATTGGTTTAC
TTTGTTCCACTGAGGACGCTCGTATATTGGTCCGTCTTGCATTGAGTTGC
TGATCTTTTCCTGTCTTCACTTAGTAGAGAGTAACTCACCAACGAACTTT
TTGTTTTATTCCAGTGGCTTCTTGCTGTATCCAAAGACTTGGGCAGATTG
GTGTTTTTTTTTCCCCCCCCCCGGATGAAANTGCCACTGAAAAATAAAGA
GGGGGGGTTGCCAAATGGACTGGACTGCTGCTGCTGATTCGTGTTGGTGT
TTTGCTAGAGAACTGGACTGCTGTCACTGAAGATTGGAATGGCCCCAATG
AACTATTACTAATCAGGTCCACAACCCTTATTTCCTATTAATTTTTCTTT
TTCCACTTCCTCTGATGGGTGGTGGACTAGAAGGGAGTTTGAAGGATTTA
AGAAACCTAATTAAAGTAGGTTTTGAAAAATCTAAGCCTACATTCCATCC
ATAAAAACCCCAAAGAAAAGCAAGTAGGTGCATACCAGAGAGAAAATCAA
GAGCAGTCTTGCTTTGCACACCCATTCTCCTGACAAACCTGCACCTGCTA
GTGTGAGCACTCACTATGGCCACAATTAACCTACCCCAGGGTGAGAAAGA
CCTTAATCCCTCTTAGCGACCCTACCGTTTTCTGAAACACCCACCTTCAA
CTCTGCTGCCTGCTTTCGAGGACAAGTCCTATTCCGGGGTGGGACTTCAT
TAAGCTCTCTTTTATAAAAAATTGTGGAAATGTCCGCCTGCCTATTGCCA
AAAAGGCCCAAAAAGGAATTGGGATCCCTTACTCTGGGGGTGCTGGGGCT
TGGGACCCCCAGTGGGGTGTCGGAAACACAGCCTGGTTTCTCACAAACTC
TCAAGTTTTAGAAATCATTTCCTTCCCCTTTCGATTTCAAATAAAAAAAG
CAATCTGTTTTACAAAACATTTTATATTTATACCCTGGATAGGCGAAAGA
CCCCCCCCTCCGGGGAAAAAACTGTTTGCCCTCCTGAGATTGTTATTTCT
TTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no305_n05.b1 MSMg01no305_n05.b1 CHROMAT_FILE:
MSMg01no305_n05.b1 PHD_FILE: MSMg01no305_n05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:14 2005
         (365 letters)



>mm_chr8_89379611_89380377
          Length = 767

 Score =  621 bits (321), Expect = 0.0
 Identities = 345/353 (97%), Gaps = 2/353 (0%)
 Strand = Plus / Plus

                                                                       
Query: 15  ggaattcctgttcatgcctctggaaac-aatgacctggctgtttttc-caccatagcagc 72
           ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 215 ggaattcctgttcatgcctctggaaacaaatgacctggctgtttttcacaccatagcagc 274

                                                                       
Query: 73  cagtcaacatgtctaaggcagaggagagttaggtaacactagctatagcagtgatcatca 132
           |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 275 cagtcaacatgtctaaggcagaggagagctaggtaacactagctagagcagtgatcatca 334

                                                                       
Query: 133 ccccaggcagggcagtggcggggaatagtggaaagccctttctgagttaacccggacagc 192
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 335 ccccaggcagggcagtggcggggaatagtggaaagccctttccgagttaacccggacagc 394

                                                                       
Query: 193 atgacttccttctggcttccacttagtaaaaactagttgtggaactgctatagaaagacc 252
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 atgacttccttctggcttccacttagtaaaaactagttgtggaactgctatagaaagacc 454

                                                                       
Query: 253 agcaacgctgggcatggtggcgcatgcctttaatctgagcactcaggaggcagaagcaga 312
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 agcaacgctgggcgtggtggcgcatgcctttaatctgagcactcaggaggcagaagcaga 514

                                                                
Query: 313 ggcaggcggatttctgagttcaaggccagcctggtctacgaagtgagttccag 365
           ||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 515 ggcaggctgatttctgagttcaaggccagcctggtctacaaagtgagttccag 567


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 767
Length adjustment: 9
Effective length of query: 356
Effective length of database: 758
Effective search space:   269848
Effective search space used:   269848
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)