BAC Information

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BAC

Clone NameMSMg01-306F17
Chromosome8 (Build37)
Map Location 46,253,745 - 46,254,261
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039508, Fat1, LOC100039673, Mtnr1a, EG622523
Downstream geneF11, Klkb1, Cyp4v3, BC035537, Tlr3, Sorbs2, Pdlim3, Ccdc110, 1700029J07Rik, 1810047C23Rik, Ankrd37, Lrp2bp, Snx25
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-306F17.T7 (MSMg01no306_f17.b1)MSMg01-306F17.TJ (MSMg01no306_f17.g1)
ACCAG431047
length713707
length of high quality
(start - end)
---517 (76 - 592)
definitionCHROMAT_FILE: MSMg01no306_f17.b1 PHD_FILE: MSMg01no306_f17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:07 2005CHROMAT_FILE: MSMg01no306_f17.g1 PHD_FILE: MSMg01no306_f17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXAN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTCACGGGGGGGTGA
CACTATAGAAGTTACAGAAGAAATCAAAGTCAGCCATCACTGTAGAGCAA
GTGTGAGCCCAGCCTGAGCTACCTCCCACTTTGTCTCAATAGGAAAAGCA
GCCAGAGTCTTGCAGTAGAGACCAAGCTCCTGATGTTAATTTTCACAAGT
TTCAGGTGAGTGATTGTTTTCCACCAGTTTATCTGTAGAGATAAATTCGT
GAGAGTAAGTTTGAGGTTCCATAAGCAAATGTGATCATGACCAGGTGGGC
TGACTACCTTTATGTCAACTGTTTTTTTGCTCAAAGTCGTTTGAGAAAGG
AAACCTTAATTGCTCAGTTGCCTCTGTAAGACTGACACATAAGCAAGTCT
GCTGTGAAGTGTCTTGATGAATGATTGTTGTGGGAGGTCCCAGCTCGCTG
TGGGCAGTGCCCTCCATGGACAGATTGTCCTGGACTGTATATGGAAGCAA
GCTGAAACAACCATGGGTAGACACCTAGTTAGAGTTCCTCTATAGCCTTT
GCTTTCCTTCTGGCCTCCAGGTTCCTACCCTGACTTCCTTCTGTTAACAC
GGTTATTTGAAAAGTGTAAATAANATAACCCCTCCTCCAACAGTTGCTTT
GTGTCTTTGTACTTTATCATATCAATAGAAACCCTAAGATACGGGCGGAG
CCTCTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no306_f17.g1 MSMg01no306_f17.g1 CHROMAT_FILE:
MSMg01no306_f17.g1 PHD_FILE: MSMg01no306_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:07 2005
         (517 letters)



>mm_chr8_46253545_46254461
          Length = 917

 Score =  891 bits (461), Expect = 0.0
 Identities = 503/523 (96%), Gaps = 12/523 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagtcagccatcactgtagagcaagtgtgagcccagcctgagctacctcccactttgtc 60
           ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 201 aaagtcagccatcactgtagagcaagtgtgagcccagcctgggctacatcccactttgtc 260

                                                                       
Query: 61  tcaataggaaaagcagccagagtcttgcagtagagaccaagctcctgatgttaattttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 tcaataggaaaagcagccagagtcttgcagtagagaccaagctcctgatgttatttttca 320

                                                                       
Query: 121 caagtttcaggtgagtgattgttttccaccagtttatctgtagagataaattcgtgagag 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 caagtttcaggtgagtgattgttttccaccagtttatctgtagagataaatttgtgagag 380

                                                                       
Query: 181 taagtttgaggttccataagcaaatgtgatcatgaccaggtgggctgactacctttatgt 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgagtttgaggttccataagcaaatgtgatcatgaccaggtgggctgactacctttatgt 440

                                                                       
Query: 241 caactg---ttttttt---gctcaaagtcgtttgagaaaggaaaccttaattgctcagtt 294
           ||||||   |         ||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 caactggact------caggctcaaagtcgtttgagaaaggaaaccttaattgctcagct 494

                                                                       
Query: 295 gcctctgtaagactgacacataagcaagtctgctgtgaagtgtcttgatgaatgattgtt 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 gcctctgtaagactgacacataagcaagtctgctgtgaagtgtcttgatgaatgattgtt 554

                                                                       
Query: 355 gtgggaggtcccagctcgctgtgggcagtgccctccatggacagattgtcctggactgta 414
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 555 gtgggaggtcccagctcgctgtgggcagtgctctccatggacagattgtcctggactgta 614

                                                                       
Query: 415 tatggaagcaagctgaaacaaccatgggtagacacctagttagagttcctctatagcctt 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tatggaagcaagctgaaacaaccatgggtagacacctagttagagttcctctatagcctt 674

                                                      
Query: 475 tgctttccttctggcctccaggttcctaccctgacttccttct 517
           ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 675 tgctttccttctggccttcaggttcctaccctgacttccttct 717


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space:   459849
Effective search space used:   459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)