Query= MSMg01no307_d14.b1 MSMg01no307_d14.b1 CHROMAT_FILE:
MSMg01no307_d14.b1 PHD_FILE: MSMg01no307_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:13 2005
(652 letters)
>mm_chr8_58383356_58384407
Length = 1052
Score = 1185 bits (613), Expect = 0.0
Identities = 640/649 (98%)
Strand = Plus / Plus
Query: 4 ggaattcctaattcacttccctgtagggtatcagatcaaacccaacaatctctaattcta 63
||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 204 ggaattcctaattcagttccctgtagggtatctggtcaaacccaacaatctctaattcta 263
Query: 64 attcacatgtaatatacaaacttatacacataaacaaattaagaacaattaaactgaaaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 attcacatgtaatatacaaacttatacacataaacaaattaagaacaattaaactgaaaa 323
Query: 124 atgccttaaattcacagataacagatttgtttaccaaagacttctctaaatgattgtgct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atgccttaaattcacagataacagatttgtttaccaaagacttctctaaatgattgtgct 383
Query: 184 tagaattaattcctgaaaaatatgctaaaatggacctttagaattccatgatgggaatac 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tagaattaattcctgaaaaatatgctaaaatggacctttagaattccatgatgggaatac 443
Query: 244 ctttacaaattcctcctcttacttgtagtctaggtccttaactttgaatggtcagattat 303
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 444 ctttacaaattcctcctcttacttgtagtcaaggtccttaactttgaatggtcagattat 503
Query: 304 gcttcattttggtattcttgttttgtaaaactaatttgattaaaattagctgacttcaaa 363
|||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 504 gcttcattttcgtattcttattttgtaaaactaatttgattaaaaatagctgacttcaaa 563
Query: 364 ttatttacaagatacattattttgagtgagactgacttaatcaggtaaaggtcagagtat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttatttacaagatacattattttgagtgagactgacttaatcaggtaaaggtcagagtat 623
Query: 424 ccatgtgactttagggaaaaacaagcagcagtattgaaactatcagtatgggtaagctac 483
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 624 ccatgtgactttagggaaaaacaagcagcagtattgaaactatcagtatgggcaagctac 683
Query: 484 ttaagaattcagtggtatgactacaaacaactaaattctattagtattaatattttagta 543
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttaagaattcagtggtataactacaaacaactaaattctattagtattaatattttagta 743
Query: 544 cgctaatcaacataaagtgccagaatgaattgatgtaaggtgattacaccttgattttga 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 cgctaatcaacataaagtgccagaatgaattgatgtaaggtgattacaccttgattttga 803
Query: 604 tttgggagaccaaactaagaacccagctaaatcctgactatcctcctct 652
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tttgggagaccaaactaagaacccagctaaatcctgactatcctcctct 852
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space: 668964
Effective search space used: 668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no307_d14.g1 MSMg01no307_d14.g1 CHROMAT_FILE:
MSMg01no307_d14.g1 PHD_FILE: MSMg01no307_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:13 2005
(622 letters)
>mm_chr8_58524105_58525123
Length = 1019
Score = 1110 bits (574), Expect = 0.0
Identities = 609/622 (97%), Gaps = 3/622 (0%)
Strand = Plus / Minus
Query: 1 atactgaaagataaaggatgcatttctgaatcattccataaccttttctctaaatgttag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 atactgaaagataaaggatgcatttctgaatcattccataaccttttctctaaatgttag 611
Query: 61 aagaaatacaacctatctataagagataagaccatttacaaaagagataaattcaacttc 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 610 aagaaatacaacctatctataagagaaaagaccatttacaaaagagataaattcaacttc 551
Query: 121 ttcctctatttttcaaacaaaatattccagcatttacaggggacacagtaacactgtctt 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ttcttctatttttcaaacaaaatattccagcatttacaggggacacagtaacactgtctt 491
Query: 181 gataattatactgaaattctccgttaaacaatgttgattcttttagcatgatggatttca 240
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 490 gataattataccgaaattctccgttaaacaatgttgatacttttagcatgatggatttca 431
Query: 241 actggagatattgtttcagtcttaaaatcatatctccctaataagattattggatgaatc 300
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 430 actggagatattgtttcagtcttaaaatcatatctccctaataagattataggatgaatc 371
Query: 301 gtcagagtggaaagacctcatggttttaagcttccaagatattatattgttatcataaag 360
|||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 370 gtcagaatggaaagacctcatggttttaagcttccaaga---tatattgttatcaaaaag 314
Query: 361 ttcttccttacaaaaaatgactccagtttattaatgtaggtatatgacatgagagattag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ttcttccttacaaaaaatgactccagtttattaatgtaggtatatgacatgagagattag 254
Query: 421 ctcttattttttaattcacatttttaactttcaacatttaggaaggagggtcccatgcat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ctcttattttttaattcacatttttaactttcaacatttaggaaggagggtcccatgcat 194
Query: 481 gtcatgtgcacatttggaagtcaaaccacaggaaaatgatagttggagcttttctcttag 540
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 193 gtcatgtgcacatttggaagtcagaccacaggaaaatgatagttggggcttttctcttag 134
Query: 541 aattgggtcctaggaaacaaatttatatcttcagccattgtagaatgtgcctcaacacac 600
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 133 aattgggtcctaggaaacaaatttatgtcttcagccattgtagaatgtgcctcaacacac 74
Query: 601 agagccatcttgctagccccca 622
||||||||||||||||||||||
Sbjct: 73 agagccatcttgctagccccca 52
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1019
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1009
Effective search space: 617508
Effective search space used: 617508
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
