BAC Information

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BAC

Clone NameMSMg01-307D21
Chromosome8 (Build37)
Map Location 4,194,181 - 4,194,460
singlet/doubletsinglet
Overlap geneB130050I23Rik
Upstream geneInsr, A430078G23Rik, Arhgef18, Pex11c, 1700019B03Rik, Zfp358, Mcoln1, Pnpla6, C330021F23Rik, 2310057J16Rik, Xab2, Pcp2, Stxbp2, Retn, 1810033B17Rik, LOC664858, Trappc5, Fcer2a, Clec4g, Cd209a, LOC664870, Cd209e, Cd209d, Cd209b, Cd209c, LOC664888, EG384770, EG664905, LOC664915, LOC664922, LOC631071, Cd209f, Cd209g
Downstream geneBC068157, Lrrc8e, Map2k7, LOC100039590, Snapc2, Ctxn1, Timm44, Elavl1, Ccl25, LOC664977, Ppia-ps8_36.1, Lass4, Vmn2r-ps89, EG633533, BC003267, LOC665021, EG623133, EG665044, EG623223, LOC100040234, Shcbp1, EG622568, LOC669393, EG631359, LOC100039687, LOC436026, Slc10a2, LOC434275
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-307D21.T7 (MSMg01no307_d21.b1)MSMg01-307D21.TJ (MSMg01no307_d21.g1)
ACCAG431667AG431668
length735726
length of high quality
(start - end)
234 (131 - 364)284 (77 - 360)
definitionCHROMAT_FILE: MSMg01no307_d21.b1 PHD_FILE: MSMg01no307_d21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:14 2005CHROMAT_FILE: MSMg01no307_d21.g1 PHD_FILE: MSMg01no307_d21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTATGGGATACGCCAGGAAAGGATTAAAGAGGAAAGGTTCCTG
ATGAAAACTCCATAGGAAGAATATCAGCATCAAATAACCTAGACCTCTGG
GAGCTCTCAGAGACTGAGACAACAACCAAAGAACACACACAGGCTGGAAC
AAGGCTAACAGTCATATGTAGCAGACATGCAGCTCAGTGTACATGTCAGC
CCTCCAAAAACTGGAGTAGAGGCTCTCCCTAAAGCTGTAGCATGACTGTG
ATATCCATTTCCAGACAGGGCTGACTTTTCTGACCTCAGTGAGAGAAGAT
GCACCTACTCTGGCATATATTTGTTGCACCCCCGCGCCCAGATACCAGGG
GCCCCAACCTCTCAGAGAAGAACGCCAGGAGAGAAAGAGGGTCCCTGTGA
GAGGAGAACCAGGAGGAATATAGTGTTTGGGATATAAGCAAATAAATAAA
CATAATTTTTTAAAAAAGTACTCACAAACCAAAAGAATCCTGGAACACAT
CAAAAACATCATCCACCATGATCAAGTAGGCTTCATCTCAAGGGTGCAGG
GATGGTTCAATATACAAAAGTCCATAAACATAATCCACTATAAAAGCAAA
CTGATCGGAAAAAAATAAGTGATCATCTTATTAGATGCTCAAAAAACCTG
TGACAAAATACAATAACCCTTCATATTAAAAGTCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACCTGCCCGGGTCACACAGCTGGT
CCTCTGTGGGACACCAGTGCTAACCACTTTGACTCATCAACTGGAGAGGA
CAAAACCAGGCTAATGTGTAGGTTTGTAACCCTGCCTGTCCTCCATTTCG
TGTGGCAGGGCCCTTATTCTTGGCCAGCGGACTTTGGGAATGTATAGCTG
GCTGGCTGGCTGGCTGAAGTAGGTGGGTATGAGCTTTTCTTTCTCCTCTC
TTCTTCATCCTGGCCCTGGGTTGTACCTGGAAGTACCTGGGTCTGCTTGG
AAAGATATTGTTGGATTCTACCCGNTACGNATCCCTTTATCTGGAAAGCC
AGGTCCTTGTCACTTACCCACCACAAAACAAAAAAGATTCAATCGAGGTG
GTTGGGTGAACAGCTAAAATCACATGAAGAGAGGTGAAGAGGCTATTGAG
AGGTAAGTTTAGTTTCAGACGTTTTGTGCACTCAAGGCACTGACTTTGGT
GGGCTGGCAAGCTGGCTACCAGCACAACCAGAGCCCTCAGTGGATGCCCA
TACTGTAGTCTACATATCCTTAGCCTACATATCCATCTGGCTTGCCTGAA
CCCTACTCCTTAGCTCTCAACCTTCCGGGAGGCTCCTCTGTGCCCCCAGC
CTTCCGGGTGTTCTCCTGCCCACTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no307_d21.g1 MSMg01no307_d21.g1 CHROMAT_FILE:
MSMg01no307_d21.g1 PHD_FILE: MSMg01no307_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:14 2005
         (284 letters)



>mm_chr8_4194091_4194774
          Length = 684

 Score =  530 bits (274), Expect = e-155
 Identities = 280/284 (98%), Gaps = 4/284 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   acctgcccgggtcacacagctggtcctctgtgggacaccagtgctaaccactttgactca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 acctgcccgggtcacacagctggtcctctgtgggacaccagtgctaaccactttgactca 311

                                                                       
Query: 61  tcaactggagaggacaaaaccaggctaatgtgtaggtttgtaaccctgcctgtcctccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tcaactggagaggacaaaaccaggctaatgtgtaggtttgtaaccctgcctgtcctccat 251

                                                                       
Query: 121 ttcgtgtggcagggcccttattcttggccagcggactttgggaatgtatagctggctggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||
Sbjct: 250 ttcgtgtggcagggcccttattcttggccagcggactttgggaatgtata----gctggc 195

                                                                       
Query: 181 tggctggctgaagtaggtgggtatgagcttttctttctcctctcttcttcatcctggccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 tggctggctgaagtaggtgggtatgagcttttctttctcctctcttcttcatcctggccc 135

                                                       
Query: 241 tgggttgtacctggaagtacctgggtctgcttggaaagatattg 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 tgggttgtacctggaagtacctgggtctgcttggaaagatattg 91


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)