Query= MSMg01no307_h14.b1 MSMg01no307_h14.b1 CHROMAT_FILE:
MSMg01no307_h14.b1 PHD_FILE: MSMg01no307_h14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:32 2005
(639 letters)
>mm_chr8_126487606_126488644
Length = 1039
Score = 371 bits (192), Expect = e-107
Identities = 216/224 (96%)
Strand = Plus / Minus
Query: 7 attcactatgtataccctgctggcctggaatttacatgggtctgagagttctttttagaa 66
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 attcactatgtagatcctgctggcctggaatttacatgggtctgagagttctttttagaa 269
Query: 67 ggaaacactgttgcatttacagtgattgtcccccacctcagtgtcaggatgggtgccctt 126
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 268 ggaaacactgttgcatttacagtgattgtcccccacctcagtgtaaggatgggtgccctt 209
Query: 127 ttcaccagagtggccgattgttacactgttgctgagccgacattgatacattgttgttat 186
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 208 ttcaccagagtggccgatagttacactgttgctgagccaacattgatacattgttgttat 149
Query: 187 caacccaacgtaacatttgcatgcgggctcaggagacacacaca 230
|||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 148 caacccgtcataacatttgcatgcgggctcaggagacacacaca 105
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space: 647241
Effective search space used: 647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no307_h14.g1 MSMg01no307_h14.g1 CHROMAT_FILE:
MSMg01no307_h14.g1 PHD_FILE: MSMg01no307_h14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:32 2005
(671 letters)
>mm_chr8_126414648_126415718
Length = 1071
Score = 1178 bits (609), Expect = 0.0
Identities = 655/673 (97%), Gaps = 10/673 (1%)
Strand = Plus / Plus
Query: 1 agtaagatacttttaacagcaagttgagactggtgatgttagtgggatgccaactataga 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 agtaagatacttttaacagcaagttgagactggtgatgttagtgggatgccaaccataga 260
Query: 61 gaggctggggaggaa--atgtgactgagagttcaagaccagcctctactacatatgagat 118
||||||||||||||| ||| | ||||||||||||| |||||||||||||||||||||||
Sbjct: 261 gaggctggggaggaagcatg-g-ctgagagttcaaggccagcctctactacatatgagat 318
Query: 119 catgtctaagaaatag-ataaaaacaggtgtagttctctcctggggaatctcaaactgtc 177
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 catgtctaagaaatgggataaaaacaggtgtagttctctcctggggaatctcaaactgtc 378
Query: 178 gtggtttgtatctttaaaacgtttggtggtggctgggatgtagctcagtggttgtgtgtt 237
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 379 gtggtttgtatctttaaaacgtt-ggtggtggctgggatgtagctcagtggttgtgtgtt 437
Query: 238 gtcctagcatgcttaaggctctgggttgggtttttaagatggtaagaggtgaccagttct 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 438 gtcctagcatgcttaaggctctgggttgggtttttaagatggtaagaggtgaccaattct 497
Query: 298 tgggcttgtgtcttctacgagcccggctgccagccttggactttgtgaggtgcttccatt 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tgggcttgtgtcttctacgagcccggctgccagccttggactttgtgaggtgcttccatt 557
Query: 358 ctggattgaccagattctcctttgtcctccctcctgggcagcttctccacagccctgcaa 417
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 558 ctggattgaccagattctcctttgtcctcccacccgggcagcttctccacagccctgcaa 617
Query: 418 gaagagcgtttctctgtgccaccagcatttgattgaaaggaagggatggtgattgttctc 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gaagagcgtttctctgtgccaccagcatttgattgaaaggaagggatggtgattgttctc 677
Query: 478 attacacacttgttaggctaaaggatccaatttccagccctggcaagaggcgcttcgggc 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 attacacacttgttaggctaaaggatccaatttccagccctggcaagaggcgcttcgggc 737
Query: 538 agcaccacggccagcgcccgccagttcgcagcgggcagtggccgtctcttaaaggggaag 597
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 738 agcaccacggccagcgcccgcctgttcgcagcgggcagtggccgtctcttaaaggggaag 797
Query: 598 atacattgccaagcagccagggaccaggcaagccacttagatcccctataagggaactaa 657
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 atactttgccaagcagccagggaccaggcaagccacttagatcccctataagggaact-- 855
Query: 658 ctggctatgattc 670
|||||||||||
Sbjct: 856 --ggctatgattc 866
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space: 701321
Effective search space used: 701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
