BAC Information

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BAC

Clone NameMSMg01-307L07
Chromosome8 (Build37)
Map Location 6,955,260 - 6,955,505
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040360
Downstream geneEG665127, EG546032
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-307L07.T7 (MSMg01no307_l07.b1)MSMg01-307L07.TJ (MSMg01no307_l07.g1)
ACCAG431989AG431990
length760768
length of high quality
(start - end)
246 (129 - 374)292 (76 - 367)
definitionCHROMAT_FILE: MSMg01no307_l07.b1 PHD_FILE: MSMg01no307_l07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:50 2005CHROMAT_FILE: MSMg01no307_l07.g1 PHD_FILE: MSMg01no307_l07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAATT
CTTTCATTTTTTCCTCCTAGTAAAAATCTTTTAAAGTTTTAACAACTGTG
ATTTGAACTATCACCTTTCACCCCTGGGATAGCTGTCACATGATTCTACC
AAAGCTTTATACTTTCAGCATTTGCTCTAAATGACTTTTATTTAGTGTTC
TCCTCCAAATTTTGTGCTAGAAACATTTTCGGAAGGGATGGTAAAATAGA
TAGTAATAAAATTATATAATAGATTAAACACATGTTGGCACGTAGTACCC
TGTTTCACCTTAGAAACTTACCTAAAATAAGTCCCCTTGGTATTTATTTG
CAACTTATTATATCTCTTTATGCATCACCCATCAACAAGGACTTTTTATT
TTTTTTGTGTTAGCCAACCCAAATTTACTAAACTTAGACAGGATCATAAC
ATCAGTTGCTCTTTTTTTAATGTGATTTTTATCTTGTCTAGCAATTAATT
CTCAATTTCAGCACCATATTTTTAGTGTATACCAAATATTGTTACATGTA
TTCAAATGTTTAAACTTTAAAAGAAAAAGAGATCAATTATTTTGTCACAC
ACATGTATTTCTACATGTACAAAATGTGGGAGAGAAATTCATCAATTACC
TTGTATGATAAAGACACTCTTAAAGATTAGTTGACAAAGGAATAAGAACC
ACAAGGAAGAATATGACGTAGAGAAGTCAGAATAGAGCAGGCAGGTTGAT
TGATGAAAAA
CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCACATTTT
TTAATGGGGTTATTTGATTTTTCTGGAATCCACCTTCTTGAGTTCTTTAT
ATATATTGGATATTAGTCCTCTATCTGATTTAGGATAGGAAAGATCCTTT
CCCAATATGTTGGTGGCCTTTTTGTCTTATTGATGGTGTCTTTTGCCTTA
CAGAAGCTTTGCAGTTTCATGAGGTCCCATTTATCAATTCTCGATCTTAC
AGCACAAGCCGTTGCTATTCTTTTCAGGAATTTTCCCCCTTGCCAATATC
TTTGAAGCTTTTCTTTTCTTTCTCCTCCCCCCCCCCCAGTGTCTCTGGTT
GTATGTGGAGCTCCTTGACCCACTTAAATTTAACCTTAGTACAAGGAGAT
AGGAATGGATCAATTCTCATTCTTCTACATGATAACCACCAGTTGTGCCA
GCACGATTTGTTGAAAATCTGTTGTTATGTCTCCCTTTTCATTTCTGATT
TTGTTAATTAGGATGCTGTCCCTGTGCCCTTAAGTGAGTCTGGCTAAGGG
TTTATCTATCTTGTTCATTTTCTCAAAGAATCAGCTCCTAGTTTGGTTGA
TTCTTTGTATAGTTCTTCTTGTTTCCACTTGATTGATTTTGCCCCCTGAT
TTTGATTATTTCTTGCCATCTATTTTTCTTGGGTGAATTTCCTTCCTTTT
TGTTCCACAGCTTTTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no307_l07.b1 MSMg01no307_l07.b1 CHROMAT_FILE:
MSMg01no307_l07.b1 PHD_FILE: MSMg01no307_l07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:50 2005
         (246 letters)



>mm_chr8_6955060_6955705
          Length = 646

 Score =  437 bits (226), Expect = e-127
 Identities = 241/246 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   atagctgtcacatgattctaccaaagctttatactttcagcatttgctctaaatgacttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 atagctgtcacatgattctaccaaagctttatactttcagcatttgctctaaatgacttt 387

                                                                       
Query: 61  tatttagtgttctcctccaaattttgtgctagaaacattttcggaagggatggtaaaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tatttagtgttctcctccaaattttgtgctagaaacattttcggaagggatggtaaaata 327

                                                                       
Query: 121 gatagtaataaaattatataatagattaaacacatgttggcacgtagtaccctgtttcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gatagtaataaaattatataatagattaaacacatgttggcacgtagtaccctgtttcac 267

                                                                       
Query: 181 cttagaaacttacctaaaataagtccccttggtatttatttgcaacttattatatctctt 240
           |||||||||  ||||||||||||||||||||||||||||||||||||||  ||| |||||
Sbjct: 266 cttagaaacaaacctaaaataagtccccttggtatttatttgcaacttagcataactctt 207

                 
Query: 241 tatgca 246
           ||||||
Sbjct: 206 tatgca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)