BAC Information

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BAC

Clone NameMSMg01-308L22
Chromosome8 (Build37)
Map Location 116,492,546 - 116,492,862
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042061, Mon1b, 4930481F22Rik, Adamts18
Downstream geneNudt7, AI427515, Clec3a, Wwox
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308L22.T7 (MSMg01no308_l22.b1)MSMg01-308L22.TJ (MSMg01no308_l22.g1)
ACCAG432731AG432732
length745750
length of high quality
(start - end)
323 (46 - 368)292 (76 - 367)
definitionCHROMAT_FILE: MSMg01no308_l22.b1 PHD_FILE: MSMg01no308_l22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:09 2005CHROMAT_FILE: MSMg01no308_l22.g1 PHD_FILE: MSMg01no308_l22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGAGAAAATGTTCGCAAGAGAATCCTACGAGACATCTTCTATCAT
AAATCTGGTGGAGAGTGGAGATTGGGCCGCTTGTGTTGCTGCCTGGCAGG
AGTTGACGAATTCTCGGCAAAACGTAGCAAGTATGGGTTGGGTTGCTTCA
TTGTGGGCAAGTGTTAACTTCCTCCTGCCTCTTCCCTCATTAGGGTCACT
CTTCCATAGCTCCTTTCTCCTCCTCTGAGAGAAGAGCTATTGAAAAGTAG
GACAGAGGATTGTGGTATCAAGCAAAACTCTACTTGAAACTTTTCTCCTT
CCCCCTACTCACCACGGTATTTTTATTAAGCTAGCTCACCACGCTTTCTT
ACTCCCTGGTATTCGTGCCTTCACCCACCTCCCTCTGACCGGAAATAGAC
ATGACAGATCTAACTAATAGGGTACTGCAGAAATGATACCTTCCAAAGTA
GAGCCACATAAAACAAGCTGCCTGTCCCTTCCATCCTTTTAAATCCCTTA
CACTGGGGGAAGGCAGTTTTGCATCACAAGCACAGCTGAACAACCAAAAA
GATGAATTTCCAAAGAGTAATCACTTGGCACTGCTGCTGGACAGCCATGG
CTTGCCAGCCATATGGAGGAACTATTGCGACCTCAGTGACCTCCCAAGAG
AACCCCCAGGGCCACAGTCTTAAATACAATCTCATGAAAGACTCN
CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTGAGGCCAGAGAAGTCACGGTTG
GGGTTGGGGGAGGCAGAGGGTAATGCCCAGAAAGAGAGAAAGAACAACAT
GCCCACACAGATAGAAAATGCAGAGAGGGGGAGAGAAGAGAGAAATAGGG
AGAGACCAAAATGTCTGGATTATATAGGCAAGAGTCTTGGGGGAAAGGGA
AGCCCAGCCTCTGGGCTGAAAAGTTCAGGGCAGAGGATGGGGTATGCCTT
GTTACAGGTAAGGACTGAGGGATGTTTGGTGAACCTGGAGGCCAGGTCTG
TCTTGGTGTGTAAAATATGTTCCTCTTTTCGCCCCCCCCCGCCTTAGAAT
CCCAATATCACACAACAAGCAAATGGCCCCACCCAGGAGAAAAAAACATC
CATCTGGACTAAAGCATCCAAGACAGTAAAGACAACACTGTAGGCAGAAG
CCAGCTTGGCTATGGAGTCTTGTTTAGAGGGCCTCACTCTTCAGTGTGGC
AGGGATAAAAAGGCATGTTGCTCTTGTAGATACTGCTGGAAGTTCAGGGA
AAGGCCTTGCAAGGTTAACAGCAAGATGGCACTTACCCTTCTTCACCAGA
GAAGAGAAACTAGGAATCTTGCTTGTAGAGAGATCCTGGCTGCCTGGTAG
GAAACCAGTTGGCATCATGGAGATGCTGAAAGCGATCAGGAATACAGGTG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_l22.b1 MSMg01no308_l22.b1 CHROMAT_FILE:
MSMg01no308_l22.b1 PHD_FILE: MSMg01no308_l22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:09 2005
         (323 letters)



>mm_chr8_116492342_116493063
          Length = 722

 Score =  584 bits (302), Expect = e-171
 Identities = 314/318 (98%), Gaps = 1/318 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagagaaaatgttcgcaagagaatcctacgagacatcttctatcataaatctggt 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagagaaaatgtt-gcaagagaatcctacgagacatcttctatcataaatctggt 263

                                                                       
Query: 65  ggagagtggagattgggccgcttgtgttgctgcctggcaggagttgacgaattctcggca 124
           ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggagagtggagatagggtcgcttgtgttgctgcctggcaggagttgacgaattctcggca 323

                                                                       
Query: 125 aaacgtagcaagtatgggttgggttgcttcattgtgggcaagtgttaacttcctcctgcc 184
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 324 aaacgtagcaagtatgggttgggttgcttcattgtgggcaagcgttaacttcctcctgcc 383

                                                                       
Query: 185 tcttccctcattagggtcactcttccatagctcctttctcctcctctgagagaagagcta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcttccctcattagggtcactcttccatagctcctttctcctcctctgagagaagagcta 443

                                                                       
Query: 245 ttgaaaagtaggacagaggattgtggtatcaagcaaaactctacttgaaacttttctcct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttgaaaagtaggacagaggattgtggtatcaagcaaaactctacttgaaacttttctcct 503

                             
Query: 305 tccccctactcaccacgg 322
           ||||||||||||||||||
Sbjct: 504 tccccctactcaccacgg 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 722
Length adjustment: 9
Effective length of query: 314
Effective length of database: 713
Effective search space:   223882
Effective search space used:   223882
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)