BAC Information

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BAC

Clone NameMSMg01-309I06
Chromosome8 (Build37)
Map Location 13,914,507 - 13,914,799
singlet/doubletsinglet
Overlap geneFbxo25
Upstream geneMcf2l, F7, F10, Proz, Pcid2, Cul4a, Lamp1, Grtp1, Adprhl1, Dcun1d2, Tmco3, Tfdp1, Atp4b, Grk1, Gm687, Gas6, LOC434282, 1700029H14Rik, Rasa3, 4932443I19Rik, LOC665516, Cdc16, Upf3a, AF366264, D8Ertd457e, 2410022L05Rik, EG665536
Downstream geneLOC100041103, 2610019F03Rik, EG546036, Erich1, Dlgap2, LOC100041140, C030037F17Rik, Cln8, Arhgef10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-309I06.T7 (MSMg01no309_i06.b1)MSMg01-309I06.TJ (MSMg01no309_i06.g1)
ACCAG433285AG433286
length735740
length of high quality
(start - end)
315 (37 - 351)294 (75 - 368)
definitionCHROMAT_FILE: MSMg01no309_i06.b1 PHD_FILE: MSMg01no309_i06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:07 2005CHROMAT_FILE: MSMg01no309_i06.g1 PHD_FILE: MSMg01no309_i06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATCA
TTTTTAATAGCTAAGTAGTACTCCATTGTGTAAATGTACCACATTTTCTG
TATCCATTCCTCTGTTGAAGGACATCTGGGTTCTTTCCAGCTCTTGGCTA
TTATAAATAAGGCTGCTATGAACATAATGGAGCATGTGTCCTTATTACAT
GTTGGAGCATCTTCTGGGTGTATGCCCAGGAGTGGTATAGCTGGGTCCTC
AGTGAATAGTAGTATTATGTCCAATTTTCTGAGGAACTGCCAAACTGATT
TCCAGAGTAGAACCAAACATTATGATAGGTGATCTGGTCACCTTTACTTG
GATTATTTTTTTTACCCCCCCCCCCCCCATAGTTTCCTGGGTCTTAATCT
TCCATAGTCCCCCCCCCACGAAAAAAAATGTGTCAGTGATGTCACATGCA
TCTTATAAACCCATCTGTAGAGTCAGCATGCAGTCTACAGTCAGAGGACC
GTCTCCATGTTATGTTCCACTTCCATGCTGTTGTTTTTCACATGCGAATC
ATTTTGAGCTTCTCTTCCATATTACTTTCCTACTTCTATCCCAGTACCTT
ATGTGAACAATGACCTTTCTAAGCTCTATTTTATTTTCTTATCCAGGTAC
AATTTAGCCTTCATATCGTTCCTATACTATCCCCGTTCCCCCCCATGTTT
CCCTCGCCCCCCCTTTTTTCTATTCCTTTCCCCCT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTCAGCCGGCTCAGGACACATCGTCT
GTCAGTGCTACCGCCTGTGCTTAACCCAGTTACCACTTCAGTACAGAGTA
CTGTACAACCCTCACTGCTTGCTCGCCACGGCTAGCCAGTGCTGAGACAC
ATGCATTCACATGTAAAGAGTTCCAAATGAGAAAAAAATTGTGGTTTTTA
TGTGTATGCAACTTTAAAAAAATGATTTATTTATTTATTTATTTAATGTA
CGTGAGTACACTGTCGCTGTCTTCAGACTCACCAGAAGAGGTTCTCAGGT
CCCATTGCAGATGGTTGTGAGCTACCATGCGCCTGCTGGGATTTGAACTC
AGGACCTCTGGGAGAGCACCCCCCGCTCTTAACCGCTGAGCCATCTCTCC
AGTCCCTGTGTATAACTTTTAATGAAAACTGATTTTTTTTTTTTTTAATT
TTCTACCTTACAGGAGCACGATGCCGTTTCTGGGTCAGGACTGGAGGTCC
CCTGGATGGAGCTGGATTAAAACAGAAGATGGGTGGAAAAAGTGTGACCC
CTGTAGCCACGAGCTCAGGAGCGAGTATAGCCAGTACACCTTCAACCACA
GTATGTGAGTCCCCTGTGTAGGCCCATTTGCTTGCTGTCAGCCCTCTGTA
ATTTGTCAGCTCACGGCAGAACCGCGGTCATCCTACCGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no309_i06.g1 MSMg01no309_i06.g1 CHROMAT_FILE:
MSMg01no309_i06.g1 PHD_FILE: MSMg01no309_i06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:07 2005
         (294 letters)



>mm_chr8_13914307_13914999
          Length = 693

 Score =  514 bits (266), Expect = e-150
 Identities = 287/294 (97%), Gaps = 1/294 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcagccggctcaggacacatcgtctgtcagtgctaccgcctgtgcttaacccagttacc 60
           ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 201 ctcagccggctcaggacacatcgtctgccagtgcgaccgcctgtgcttaacccagttacc 260

                                                                       
Query: 61  acttcagtacagagtactgtacaaccctcactgcttgctcgccacggctagccagtgctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acttcagtacagagtactgtacaaccctcactgcttgctcgccacggctagccagtgctg 320

                                                                       
Query: 121 agacacatgcattcacatgtaaagagttccaaatgagaaaaaaattgtggtttttatgtg 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 321 agacacatgcattcacatgtaaagagttccaaatgagaaaaaa-ttgtgttttttatgtg 379

                                                                       
Query: 181 tatgcaactttaaaaaaatgatttatttatttatttatttaatgtacgtgagtacactgt 240
           |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 380 tatgcaactttaaaaaaatgatttatttatttatttattttatgtatgtgagtacactgt 439

                                                                 
Query: 241 cgctgtcttcagactcaccagaagaggttctcaggtcccattgcagatggttgt 294
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cgctgtcttcagacacaccagaagaggttctcaggtcccattgcagatggttgt 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 693
Length adjustment: 9
Effective length of query: 285
Effective length of database: 684
Effective search space:   194940
Effective search space used:   194940
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)