BAC Information

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BAC

Clone NameMSMg01-311B14
Chromosome8 (Build37)
Map Location 61,235,392 - 61,235,703
singlet/doubletsinglet
Overlap gene4930431L04Rik
Upstream geneLOC100040711
Downstream geneBC030500, LOC665116, LOC436042
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311B14.T7 (MSMg01no311_b14.b1)MSMg01-311B14.TJ (MSMg01no311_b14.g1)
ACCAG433697AG433698
length729762
length of high quality
(start - end)
316 (45 - 360)---
definitionCHROMAT_FILE: MSMg01no311_b14.b1 PHD_FILE: MSMg01no311_b14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:51 2005CHROMAT_FILE: MSMg01no311_b14.g1 PHD_FILE: MSMg01no311_b14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATAGCTCAAGGAAAATCATCAATGTTGTACTAACTTATAAATTCCC
TCGAGAAAAAAGTAGTTGATTAACACAATGCTTCGGTTTTAATAAGAAAG
TAAATATTTAACAGTGTGTTTGTCTAAAGTTAATTAGAGGAAGATGTCGC
ACAAACATATTCACGGTATTCCATCACTGTTATCAATTGGTTTATTGATT
CTACTAATGGTACAAACAACAAACTTTGTGTGTGTAAAGCCAAATGCCAA
TGATTCTAGGGGTCATTCTTTCACTTTGTTTATGGCCGTTATCAGCTTCC
TTTGAAGAAACATTCTCTTTACACCCCCCCCCCCCTTTTAAGAAATGTAA
ATATAATGCTCCTAAACACTCCCCCCAAACATATAAAGAAATAATTTGCC
GGGGAGTGTTTTTTAAAGCAAAACATATGATAATAACCTCACACTATCAG
AAAATTTAAGTATATTTAACCATAGCCATCCCCCACTTATAGACTGTCCC
ATTGTTTTACAAGCACCAGTAATCTTTCCATAGCTGATGTCATTTTGTGA
AATGTATTTCCACTTTCCCAAAAGAGCTTCCAGATTATAAACAAATGTTT
GTCCTTGCGCATGTTGAATGCAGCGCGAAATACAAGCTGGTATCCTTGAC
TATTTTTTGGTCTTTAAAATGATTTCGCG
ACCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAACATGGTCTTAGAGAAAACTCT
AAGAATGCCAGGGCCAAGAAGTGTGACCCCNGCGGATAGGGGAGGNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGNNNNNNNNNNNNNNNNNNNN
NNNNNNCCCCCNCCCCCCCCCCCCCAACCCCCGCCCCCCCCCCCANNCCA
CACACCCCCCCTCTCCCCCCCCACCCTCCCCTCCTCCCCCCTCCCCCCTC
CCCCTTCCTCCACCCCCCCCACCCCCCCCTTTTTTTTTTCCCCCCCCCCC
ACAAAAAAAGAAAAAAAATTTTTGGGTAGACTCCAAAAACCAAACCCCTT
TTTATTTTTTTTTTTTTTTGGGGNNGNNNCCCCCCCCCCCAANNAATTTN
AAAAAAAGCGCCCCCGCCCCGGGCGCTCNCTTTTTCCCCCCCTCTCCCCC
CTTCCCCCCTCCTCCCCCTCCCCCCCCCCCCCCCTCTCCCCCCCCCCTTC
TCCCCCTCCCCTCTCTTCTCCCCTCCCCCCCTCCTCCTCCCCTCCTCCCT
CCTCCCCTTTCCCCCTCTCCCCCCCTCCCCTTCCCCCCCCCCTTTCCCCC
CTCCCTCCCCCCCCCCCCCCCCCCCCCTCCCCCTCCCCCTCCCCTCCCCC
CCCCCCCCCCCTCCCTTTTCTTTTCCCCCCCCCCCCCCCCTCCCCCNTTC
CCCTTCCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_b14.b1 MSMg01no311_b14.b1 CHROMAT_FILE:
MSMg01no311_b14.b1 PHD_FILE: MSMg01no311_b14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:51 2005
         (316 letters)



>mm_chr8_61235189_61235903
          Length = 715

 Score =  582 bits (301), Expect = e-171
 Identities = 310/313 (99%), Gaps = 1/313 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcatagctcaaggaaaatcatcaatgttgtactaacttataaattccctcgagaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ggaattcatagctcaaggaaaatcatcaatgttgtactaacttataaattccctcgagaa 456

                                                                       
Query: 64  aaaagtagttgattaacacaatgcttcggttttaataagaaagtaaatatttaacagtgt 123
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 455 aaaagtagttgattaacacaatgcttcgg-tttaataagaaagtaaatatttaacagtgt 397

                                                                       
Query: 124 gtttgtctaaagttaattagaggaagatgtcgcacaaacatattcacggtattccatcac 183
           ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 396 gtttgtctaaagttaattagaggaagatgtcacacaaacatattcgcggtattccatcac 337

                                                                       
Query: 184 tgttatcaattggtttattgattctactaatggtacaaacaacaaactttgtgtgtgtaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgttatcaattggtttattgattctactaatggtacaaacaacaaactttgtgtgtgtaa 277

                                                                       
Query: 244 agccaaatgccaatgattctaggggtcattctttcactttgtttatggccgttatcagct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 agccaaatgccaatgattctaggggtcattctttcactttgtttatggccgttatcagct 217

                        
Query: 304 tcctttgaagaaa 316
           |||||||||||||
Sbjct: 216 tcctttgaagaaa 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 715
Length adjustment: 9
Effective length of query: 307
Effective length of database: 706
Effective search space:   216742
Effective search space used:   216742
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)