BAC Information

Click to search

BAC

Clone NameMSMg01-311B15
Chromosome8 (Build37)
Map Location 32,331,587 - 32,331,900
singlet/doubletsinglet
Overlap geneFut10
Upstream geneLOC547008, Dusp26, Rnf122, BC019943, Rbm13, LOC666330
Downstream geneLOC666568, 7420700N18Rik, LOC100041329, EG330731, LOC100041340, Nrg1, 2010007E15Rik, EG666589
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311B15.T7 (MSMg01no311_b15.b1)MSMg01-311B15.TJ (MSMg01no311_b15.g1)
ACCAG433699AG433700
length721727
length of high quality
(start - end)
320 (46 - 365)289 (76 - 364)
definitionCHROMAT_FILE: MSMg01no311_b15.b1 PHD_FILE: MSMg01no311_b15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:51 2005CHROMAT_FILE: MSMg01no311_b15.g1 PHD_FILE: MSMg01no311_b15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCTGTCTGGGTTTGTTTGGCTTTATTTATTTATTGGAAAGCAGG
GAGAGTTGAACCCAAGACCTTGCACATGTTAAGGATTCAGCTGTTTCAGC
TCATTTTAGATCTTGGAATGTACTTGCATTGTATGTGTTGAAATCTGCTT
GCTCTTTCGATGGGATATTATGGCACTGCATATTAATATATACCTACCAC
ATCACCACCACCACCACCATCACCACCACCACCATCACCATCATCACCAT
CACCACCACCACCACCACCATCATCACCACCACCATCACCATCATCACCA
TCACCACCACCACTATCATCTCCACCACTATCACCACCACCACCATCATC
ACCACCACCACCACCATCACCACCTCCAACAACATCATCACCATCACCAC
CACCATCACCATCATCATCATCATCGAATTGCTCACCTAATCTGTTGCTG
ACTGAGTTATCGAGCTATGGTACTTGAGATTACATAGAGAAATTTGACCA
CAGGAAAGGAAGGTAGATACAGCTGTTCTCCAGTATAGCCAGGCATCTTA
GTCTGTGATGCTATTCCAAATCCCCACAGCCTGAGTGTTTATGTAACACT
TGGTTACAGTCCTGATCTGTTAAACATCACGTCAAATGCTAGGGAAGTCC
ACATTTGGGCTTAGTTCCCCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAG
AGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTAAGATTCCACCTCACACCAGTCAGAATGTCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAA
TCCGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCC
AGCAATACCTCTCTCTGGTCTTATATCCACACCCACGCCCCAACTGGTAA
GAAGGACACATGCTCCACTATCCCCACCACCAAATAATATATAATAGCCA
GAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAA
ATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTTAAAAGAATGA
ATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGA
GTGAGGTAACACATTCACAAAGGAACTCCCACAATATGTACTCACTGATA
AGTGGATATTAGCCCAAACCTTAGGATACCCAGGATATAAGATACAATTT
CTTAAACCCTGCAAACTCATGAAAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_b15.b1 MSMg01no311_b15.b1 CHROMAT_FILE:
MSMg01no311_b15.b1 PHD_FILE: MSMg01no311_b15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:51 2005
         (320 letters)



>mm_chr8_32331383_32332102
          Length = 720

 Score =  607 bits (314), Expect = e-178
 Identities = 314/314 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttctgtctgggtttgtttggctttatttatttattggaaagcagggagagttga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttctgtctgggtttgtttggctttatttatttattggaaagcagggagagttga 264

                                                                       
Query: 65  acccaagaccttgcacatgttaaggattcagctgtttcagctcattttagatcttggaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acccaagaccttgcacatgttaaggattcagctgtttcagctcattttagatcttggaat 324

                                                                       
Query: 125 gtacttgcattgtatgtgttgaaatctgcttgctctttcgatgggatattatggcactgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtacttgcattgtatgtgttgaaatctgcttgctctttcgatgggatattatggcactgc 384

                                                                       
Query: 185 atattaatatatacctaccacatcaccaccaccaccaccatcaccaccaccaccatcacc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atattaatatatacctaccacatcaccaccaccaccaccatcaccaccaccaccatcacc 444

                                                                       
Query: 245 atcatcaccatcaccaccaccaccaccaccatcatcaccaccaccatcaccatcatcacc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atcatcaccatcaccaccaccaccaccaccatcatcaccaccaccatcaccatcatcacc 504

                         
Query: 305 atcaccaccaccac 318
           ||||||||||||||
Sbjct: 505 atcaccaccaccac 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)