BAC Information

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BAC

Clone NameMSMg01-311J23
Chromosome8 (Build37)
Map Location 117,625,904 - 117,798,613
singlet/doubletdoublet
Overlap geneWwox
Upstream geneNudt7, AI427515, Clec3a
Downstream geneMaf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311J23.T7 (MSMg01no311_j23.b1)MSMg01-311J23.TJ (MSMg01no311_j23.g1)
ACCAG434073AG434074
length727727
length of high quality
(start - end)
320 (46 - 365)290 (77 - 366)
definitionCHROMAT_FILE: MSMg01no311_j23.b1 PHD_FILE: MSMg01no311_j23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:31 2005CHROMAT_FILE: MSMg01no311_j23.g1 PHD_FILE: MSMg01no311_j23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,625,904 - 117,626,219)(117,798,324 - 117,798,613)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGACAACAGTCCAGCGGTTATTGTTTGCAGCAAATGACTGCAGCA
GATTAACCACAAGTTAAGAACAAGTCAGGGCTACTCTTTGAGTCAGGTAC
GGCTGGGGTCTGCTTCCCATCCATCAGTGTCAGGATCACGTGCAATCCCA
GATCTCTGTAACTCTCAAAGTATTGCAGGGTGCCGCGTGCTAAATGGAGG
CCGAGAGGAAAGGCATTCTGCTTGCAGCTCAATCTTGTAAGGATTCTTTC
AAAAGCATATTAATCCATTAGTAATCCATTTTGATTTAAAAATAATGGTC
ATATATATTTGGTACTTTATGTTCTCACCCCCCCCCCGCCAAAATGATAT
GGAATCACAAGTTTAAACCCTACCACCCCCACAGAAAGAATTGTTGAAAT
CTCCTCTACTACTATTTTTGTTAAAAAAATAGTAATTGCTATATCAAGTA
TCTATCAAGAGGGAATCTGTGAGTCAGGTATGGCACACACCAGTAATCCC
AGCACTCAGGAGGTGGATGCAGGGGAGGCATGAGTTTCAGGCTGGTCTGG
GCTTCATTTGAAGATCCTGTGTTAACATGCAAAATTAAAGAAAAGATCAG
TAGAGAAGGTCCGTGGTGTCTCTGAGGGCAGAGAGGGAGGCGCAGGCAGG
AGAGAGAAATTTTCATTTAACACCTTN
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGAAGGTGCCATGCTGGAGGGCA
CACAAAAGACTAGCTAAGCACTCATCACTACCAAGAGGGCAAAAAATATA
AGGGCTGATGGATGCTGGTCTGGGGGATGTTGGTTTAGGGGATGCTGAGC
TGGGACTGCCATTAGTACCCCCTGTAGAAATGAACTCAGTTCTAAGAACA
GCAGCATCCTGTGTGTCACCGACCAAAGAACACAGAAGTTTCAAGATTCT
GTTGGCCACCTGGCTCATCTGTCAGACTGATTGGACTGCATTTTAGGGAC
ATATCCCTAAACCTACTTTNATGNATTACCGCNTGCGTCCTCGCATTCCT
GGGCAAGACTGGTGCACTTTGTCAGCCCCCCGAAAAACAAAAGAGATCTT
TTTGGGAGAGAAGAAAGAAAACAGGTAAGAAGCTTAGTACTTCCAACAGC
GCTGAGATGCAAGGCACTGTAAGAAAACACACAAATCCAAAACTGCTTTA
TCAGGCCCCATGGTGCGTGAGTTTTGCCAGGCTTGGCTGGAACTGTGGTC
AGCCGCCAGGTTTTGAATCAATGCTGGCACTGAATGGATCAGCAATGCAC
AAGTCCCTCTTGGAGACATTACAACTTGCTTTCAAACAGTTTATGAAGAG
GCTCCTAGGTATGGGCCAGACCATGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_j23.b1 MSMg01no311_j23.b1 CHROMAT_FILE:
MSMg01no311_j23.b1 PHD_FILE: MSMg01no311_j23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:31 2005
         (320 letters)



>mm_chr8_117625700_117626419
          Length = 720

 Score =  603 bits (312), Expect = e-177
 Identities = 315/316 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgacaacagtccagcggttattgtttgcagcaaatgactgcagcagattaacca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgacaacagtccagcggttattgtttgcagcaaatgactgcagcagattaacca 264

                                                                       
Query: 65  caagttaagaacaagtcagggctactctttgagtcaggtacggctggggtctgcttccca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caagttaagaacaagtcagggctactctttgagtcaggtacggctggggtctgcttccca 324

                                                                       
Query: 125 tccatcagtgtcaggatcacgtgcaatcccagatctctgtaactctcaaagtattgcagg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tccatcagtgtcaggatcacgtgcaatcccagatctctgtaactctcaaagtattgcagg 384

                                                                       
Query: 185 gtgccgcgtgctaaatggaggccgagaggaaaggcattctgcttgcagctcaatcttgta 244
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtgccgcatgctaaatggaggccgagaggaaaggcattctgcttgcagctcaatcttgta 444

                                                                       
Query: 245 aggattctttcaaaagcatattaatccattagtaatccattttgatttaaaaataatggt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aggattctttcaaaagcatattaatccattagtaatccattttgatttaaaaataatggt 504

                           
Query: 305 catatatatttggtac 320
           ||||||||||||||||
Sbjct: 505 catatatatttggtac 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no311_j23.g1 MSMg01no311_j23.g1 CHROMAT_FILE:
MSMg01no311_j23.g1 PHD_FILE: MSMg01no311_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:31 2005
         (290 letters)



>mm_chr8_117798124_117798813
          Length = 690

 Score =  545 bits (282), Expect = e-160
 Identities = 288/290 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaaggtgccatgctggagggcacacaaaagactagctaagcactcatcactaccaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 cagaaggtgccatgctggagggcacacaaaagactagctaagcactcatcactaccaaga 431

                                                                       
Query: 61  gggcaaaaaatataagggctgatggatgctggtctgggggatgttggtttaggggatgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gggcaaaaaatataagggctgatggatgctggtctgggggatgttggtttaggggatgct 371

                                                                       
Query: 121 gagctgggactgccattagtaccccctgtagaaatgaactcagttctaagaacagcagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gagctgggactgccattagtaccccctgtagaaatgaactcagttctaagaacagcagca 311

                                                                       
Query: 181 tcctgtgtgtcaccgaccaaagaacacagaagtttcaagattctgttggccacctggctc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 310 tcctgtgtgtcaccgaccaaagaacacagaagtttcaagattctgttggccacccggctc 251

                                                             
Query: 241 atctgtcagactgattggactgcattttagggacatatccctaaacctac 290
           |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 250 atctgtcagactgaatggactgcattttagggacatatccctaaacctac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)